Strain Fitness in Shewanella oneidensis MR-1 around SO3533

Experiment: Gelatin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntileS and ribF are separated by 32 nucleotidesribF and mviN are separated by 65 nucleotides SO3532: ileS - isoleucyl-tRNA synthetase (NCBI ptt file), at 3,685,808 to 3,688,630 ileS SO3533: ribF - riboflavin biosynthesis protein RibF (NCBI ptt file), at 3,688,663 to 3,689,598 ribF SO3534: mviN - MviN protein (NCBI ptt file), at 3,689,664 to 3,691,223 mviN Position (kb) 3688 3689 3690Strain fitness (log2 ratio) -1 0 1at 3689.641 kb on - strandat 3689.641 kb on - strandat 3689.641 kb on - strandat 3689.641 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
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3,689,641 - -0.2
3,689,641 - -1.7
3,689,641 - -0.7
3,689,641 - -0.2

Or see this region's nucleotide sequence