Strain Fitness in Shewanella oneidensis MR-1 around SO3180

Experiment: Gelatin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gelatin (C)
3,318,013	+		SO3179	0.66	-2.4
3,318,021	-		SO3179	0.67	-1.8
3,318,021	-		SO3179	0.67	-2.3
3,318,052	+		SO3179	0.69	-2.1
3,318,052	+		SO3179	0.69	-3.1
3,318,052	+		SO3179	0.69	-3.9
3,318,057	+		SO3179	0.70	-1.7
3,318,057	+		SO3179	0.70	-3.0
3,318,060	+		SO3179	0.70	-4.3
3,318,060	-		SO3179	0.70	-2.3
3,318,060	-		SO3179	0.70	-3.8
3,318,060	-		SO3179	0.70	-5.2
3,318,060	-		SO3179	0.70	-2.4
3,318,065	-		SO3179	0.70	-5.0
3,318,104	+		SO3179	0.74	-3.4
3,318,104	+		SO3179	0.74	-3.8
3,318,104	+		SO3179	0.74	-1.7
3,318,104	+		SO3179	0.74	-1.1
3,318,104	+		SO3179	0.74	-4.4
3,318,104	+		SO3179	0.74	-4.1
3,318,112	-		SO3179	0.74	-4.2
3,318,112	-		SO3179	0.74	-2.7
3,318,112	-		SO3179	0.74	-3.1
3,318,112	-		SO3179	0.74	-4.6
3,318,112	-		SO3179	0.74	-2.7
3,318,112	-		SO3179	0.74	-1.1
3,318,112	-		SO3179	0.74	-4.8
3,318,112	-		SO3179	0.74	-3.4
3,318,112	-		SO3179	0.74	-3.9
3,318,112	-		SO3179	0.74	-3.9
3,318,309	+				-3.6
3,318,344	+				-2.7
3,318,344	+				-2.1
3,318,347	-				-3.6
3,318,349	+				-2.1
3,318,352	-				-3.8
3,318,352	-				-4.4
3,318,352	-				-5.1
3,318,479	+				-2.0
3,318,479	+				-3.4
3,318,479	+				-3.9
3,318,479	+				-2.1
3,318,497	-				-2.4
3,318,497	-				-0.1
3,318,523	+				-2.4
3,318,523	+				-3.2
3,318,523	+				-0.8
3,318,531	-				-4.7
3,318,554	+				-1.7
3,318,557	-				-2.1
3,318,558	+				-3.7
3,318,570	+				-2.6
3,318,578	-				-2.2
3,318,585	-				-3.1
3,318,616	-				-3.1
3,318,617	+				-2.7
3,318,617	+				-1.1
3,318,643	+				-2.6
3,318,643	+				-2.0
3,318,683	-				-2.4
3,318,685	+				-2.1
3,318,685	+				-3.1
3,318,703	+				-2.3
3,318,709	+				-2.2
3,318,717	+				-2.9
3,318,717	+				-1.9
3,318,722	+				-1.4
3,318,725	-				-3.0
3,318,726	-				-3.9
3,318,732	+				-3.6
3,318,732	+				-4.1
3,318,732	+				-2.3
3,318,732	+				-1.1
3,318,732	+				-5.4
3,318,732	+				-2.7
3,318,733	+				-3.7
3,318,735	-				-4.1
3,318,740	-				-1.7
3,318,740	-				-2.8
3,318,740	-				-2.8
3,318,740	-				-2.4
3,318,740	-				-1.1
3,318,740	-				-2.2
3,318,740	-				-2.1
3,318,741	-				-4.2
3,318,741	-				-2.8
3,318,741	-				-3.0
3,318,757	-				-3.3
3,318,844	-				-2.7
3,318,854	-				-2.3
3,318,854	-				-2.3
3,318,912	-				-1.7
3,319,038	+				-3.4
3,319,077	+		SO3180	0.12	-3.4
3,319,080	+		SO3180	0.12	-2.8
3,319,080	+		SO3180	0.12	-2.7
3,319,080	+		SO3180	0.12	-2.9
3,319,080	+		SO3180	0.12	-5.1
3,319,085	-		SO3180	0.12	-1.7
3,319,085	-		SO3180	0.12	-3.7
3,319,085	-		SO3180	0.12	-2.9
3,319,088	-		SO3180	0.13	-4.9
3,319,088	-		SO3180	0.13	-2.6
3,319,088	-		SO3180	0.13	-4.9
3,319,088	-		SO3180	0.13	-2.9
3,319,088	-		SO3180	0.13	-4.1
3,319,130	-		SO3180	0.18	-4.6
3,319,185	+		SO3180	0.24	-3.6
3,319,205	-		SO3180	0.26	-3.6
3,319,225	+		SO3180	0.28	-2.1
3,319,226	+		SO3180	0.28	-2.4
3,319,233	-		SO3180	0.29	-2.6
3,319,233	-		SO3180	0.29	-5.9
3,319,233	-		SO3180	0.29	-4.4
3,319,235	+		SO3180	0.29	-3.3
3,319,235	+		SO3180	0.29	-1.4
3,319,243	-		SO3180	0.30	-2.9
3,319,243	-		SO3180	0.30	-2.4
3,319,243	-		SO3180	0.30	-4.3
3,319,243	-		SO3180	0.30	-2.4
3,319,243	-		SO3180	0.30	-3.2
3,319,243	-		SO3180	0.30	-3.1
3,319,247	+		SO3180	0.31	-1.4
3,319,248	-		SO3180	0.31	-3.7
3,319,254	+		SO3180	0.31	-2.9
3,319,254	-		SO3180	0.31	-4.0
3,319,254	-		SO3180	0.31	-5.1
3,319,254	-		SO3180	0.31	-3.6
3,319,262	-		SO3180	0.32	-4.0
3,319,262	-		SO3180	0.32	-3.3
3,319,276	-		SO3180	0.34	-3.6
3,319,281	-		SO3180	0.34	-4.4
3,319,375	+		SO3180	0.45	-4.3
3,319,383	-		SO3180	0.46	-4.0
3,319,383	-		SO3180	0.46	-3.7
3,319,488	+		SO3180	0.57	-3.4
3,319,490	-		SO3180	0.58	-2.1
3,319,549	-		SO3180	0.64	-2.9
3,319,561	+		SO3180	0.66	-3.1
3,319,569	-		SO3180	0.66	-4.4
3,319,570	-		SO3180	0.67	-3.8
3,319,574	+		SO3180	0.67	-3.0
3,319,574	+		SO3180	0.67	-0.1
3,319,582	-		SO3180	0.68	-4.1
3,319,582	-		SO3180	0.68	-4.0
3,319,592	+		SO3180	0.69	-3.4
3,319,607	+		SO3180	0.71	-2.7
3,319,609	+		SO3180	0.71	-2.7
3,319,609	+		SO3180	0.71	-2.0
3,319,609	+		SO3180	0.71	-4.5
3,319,609	+		SO3180	0.71	-5.8
3,319,609	+		SO3180	0.71	-4.1
3,319,609	+		SO3180	0.71	-5.0
3,319,609	+		SO3180	0.71	-4.7
3,319,609	+		SO3180	0.71	-2.4
3,319,609	+		SO3180	0.71	-3.6
3,319,609	+		SO3180	0.71	-3.3
3,319,609	+		SO3180	0.71	-5.6
3,319,609	+		SO3180	0.71	-2.1
3,319,609	+		SO3180	0.71	-5.1
3,319,609	+		SO3180	0.71	-3.1
3,319,609	+		SO3180	0.71	-2.7
3,319,609	+		SO3180	0.71	-3.1
3,319,609	+		SO3180	0.71	-2.9
3,319,609	+		SO3180	0.71	-3.7
3,319,609	+		SO3180	0.71	-3.8
3,319,609	+		SO3180	0.71	-1.7
3,319,609	+		SO3180	0.71	-1.1
3,319,609	+		SO3180	0.71	-4.1
3,319,609	+		SO3180	0.71	-1.7
3,319,609	+		SO3180	0.71	-1.1
3,319,609	+		SO3180	0.71	-3.1
3,319,609	+		SO3180	0.71	-2.5
3,319,609	+		SO3180	0.71	-3.3
3,319,612	+		SO3180	0.71	-2.7
3,319,617	-		SO3180	0.72	-3.1
3,319,617	-		SO3180	0.72	-2.4
3,319,617	-		SO3180	0.72	-3.2
3,319,617	-		SO3180	0.72	-5.5
3,319,617	-		SO3180	0.72	-4.1
3,319,617	-		SO3180	0.72	-2.4
3,319,617	-		SO3180	0.72	-3.9
3,319,617	-		SO3180	0.72	-2.6
3,319,617	-		SO3180	0.72	-4.1
3,319,617	-		SO3180	0.72	-2.6
3,319,617	-		SO3180	0.72	-3.4
3,319,617	-		SO3180	0.72	-3.8
3,319,617	-		SO3180	0.72	-2.9
3,319,617	-		SO3180	0.72	-3.3
3,319,617	-		SO3180	0.72	-1.1
3,319,617	-		SO3180	0.72	-4.0
3,319,617	-		SO3180	0.72	-0.8
3,319,617	-		SO3180	0.72	-1.1
3,319,617	-		SO3180	0.72	-4.6
3,319,617	-		SO3180	0.72	-2.1
3,319,617	-		SO3180	0.72	-4.1
3,319,617	-		SO3180	0.72	-4.0
3,319,617	-		SO3180	0.72	-2.7
3,319,617	-		SO3180	0.72	-5.2
3,319,617	-		SO3180	0.72	-2.9
3,319,617	-		SO3180	0.72	-3.6
3,319,617	-		SO3180	0.72	-3.3
3,319,617	-		SO3180	0.72	-2.4
3,319,617	-		SO3180	0.72	-3.4
3,319,617	-		SO3180	0.72	-3.8
3,319,617	-		SO3180	0.72	-4.5
3,319,617	-		SO3180	0.72	-4.1
3,319,617	-		SO3180	0.72	-4.3
3,319,617	-		SO3180	0.72	-2.7
3,319,617	-		SO3180	0.72	-3.2
3,319,617	-		SO3180	0.72	-3.1
3,319,617	-		SO3180	0.72	-4.3
3,319,617	-		SO3180	0.72	-3.2
3,319,617	-		SO3180	0.72	-3.9
3,319,617	-		SO3180	0.72	-3.4
3,319,617	-		SO3180	0.72	-2.3
3,319,617	-		SO3180	0.72	-4.4
3,319,617	-		SO3180	0.72	-4.4
3,319,617	-		SO3180	0.72	-4.0
3,319,617	-		SO3180	0.72	-4.8
3,319,617	-		SO3180	0.72	-3.9
3,319,617	-		SO3180	0.72	-5.9
3,319,617	-		SO3180	0.72	-2.9
3,319,627	+		SO3180	0.73	-3.4
3,319,635	-		SO3180	0.74	-4.0
3,319,657	+		SO3180	0.76	-1.1
3,319,784	-				-3.4
3,319,792	+				-1.7
3,319,800	-				-3.3
3,319,805	-				-4.1
3,319,813	-				-2.9
3,319,838	-				-4.0
3,319,841	+				-2.3
3,319,841	+				-2.9
3,319,843	+				-3.3
3,319,843	+				-1.7
3,319,843	+				-1.7
3,319,849	-				-5.2
3,319,849	-				-3.4
3,319,849	-				-2.9
3,319,849	-				-2.9
3,319,849	-				-3.6
3,319,849	-				-2.7
3,319,849	-				-3.6
3,319,849	-				-4.8
3,319,849	-				-3.2
3,319,849	-				-2.7
3,319,851	-				-4.4
3,319,887	+				-1.4
3,319,900	+				-4.9
3,319,911	+				-2.9
3,319,927	-				-2.7
3,319,939	+				-4.3
3,320,025	-		SO3181	0.11	-3.7
3,320,179	-		SO3181	0.21	-2.2
3,320,318	-		SO3181	0.31	-3.3
3,320,520	-		SO3181	0.44	-1.7
3,320,719	-		SO3181	0.57	-2.1
3,320,736	-		SO3181	0.58	-2.7