Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0853 and SO0854 are separated by 1 nucleotides SO0854 and SO0855 are separated by 226 nucleotides SO0855 and SO0856 overlap by 4 nucleotides
SO0853: SO0853 - pilin, putative (NCBI ptt file), at 874,887 to 875,321
SO0853
SO0854: SO0854 - type IV pilin, putative (NCBI ptt file), at 875,323 to 875,694
SO0854
SO0855: SO0855 - conserved hypothetical protein (NCBI ptt file), at 875,921 to 877,198
SO0855
SO0856: SO0856 - conserved hypothetical protein (NCBI ptt file), at 877,195 to 879,888
SO0856
Position (kb) 875
876
877
878 Strain fitness (log2 ratio) -2
-1
0
1 at 875.017 kb on + strand, within SO0853 at 875.018 kb on + strand, within SO0853 at 875.115 kb on - strand, within SO0853 at 875.132 kb on + strand, within SO0853 at 875.237 kb on + strand, within SO0853 at 875.237 kb on + strand, within SO0853 at 875.237 kb on + strand, within SO0853 at 875.245 kb on - strand, within SO0853 at 875.373 kb on + strand, within SO0854 at 875.374 kb on + strand, within SO0854 at 875.425 kb on - strand, within SO0854 at 875.459 kb on - strand, within SO0854 at 875.475 kb on - strand, within SO0854 at 875.488 kb on + strand, within SO0854 at 875.648 kb on + strand, within SO0854 at 875.667 kb on + strand at 875.675 kb on - strand at 875.708 kb on - strand at 875.720 kb on + strand at 875.861 kb on + strand at 875.869 kb on - strand at 875.869 kb on - strand at 875.948 kb on - strand at 875.999 kb on + strand at 876.015 kb on - strand at 876.155 kb on - strand, within SO0855 at 876.200 kb on + strand, within SO0855 at 876.200 kb on + strand, within SO0855 at 876.208 kb on - strand, within SO0855 at 876.239 kb on - strand, within SO0855 at 876.294 kb on - strand at 876.332 kb on + strand, within SO0855 at 876.342 kb on + strand, within SO0855 at 876.353 kb on + strand, within SO0855 at 876.353 kb on + strand, within SO0855 at 876.464 kb on + strand, within SO0855 at 876.543 kb on - strand, within SO0855 at 876.560 kb on + strand, within SO0855 at 876.670 kb on - strand, within SO0855 at 876.761 kb on + strand, within SO0855 at 876.864 kb on - strand, within SO0855 at 876.938 kb on - strand, within SO0855 at 876.948 kb on + strand, within SO0855 at 876.948 kb on + strand, within SO0855 at 877.127 kb on + strand at 877.162 kb on - strand at 877.193 kb on + strand at 877.201 kb on - strand at 877.210 kb on - strand at 877.270 kb on + strand at 877.298 kb on + strand at 877.316 kb on - strand at 877.389 kb on - strand at 877.535 kb on - strand, within SO0856 at 877.535 kb on - strand, within SO0856 at 877.548 kb on + strand, within SO0856 at 877.579 kb on + strand, within SO0856 at 877.584 kb on + strand, within SO0856 at 877.592 kb on - strand, within SO0856 at 877.680 kb on - strand, within SO0856 at 877.685 kb on - strand, within SO0856 at 877.724 kb on + strand, within SO0856 at 877.799 kb on - strand, within SO0856 at 877.824 kb on - strand, within SO0856 at 877.941 kb on + strand, within SO0856 at 877.949 kb on - strand, within SO0856 at 878.042 kb on + strand, within SO0856 at 878.058 kb on - strand, within SO0856 at 878.121 kb on - strand, within SO0856 at 878.129 kb on - strand, within SO0856
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 875,017 + SO0853 0.30 +0.5 875,018 + SO0853 0.30 -0.5 875,115 - SO0853 0.52 -0.1 875,132 + SO0853 0.56 -0.4 875,237 + SO0853 0.80 -0.1 875,237 + SO0853 0.80 -0.3 875,237 + SO0853 0.80 -0.4 875,245 - SO0853 0.82 +0.8 875,373 + SO0854 0.13 +0.1 875,374 + SO0854 0.14 -1.4 875,425 - SO0854 0.27 -0.1 875,459 - SO0854 0.37 +0.2 875,475 - SO0854 0.41 -0.4 875,488 + SO0854 0.44 -0.2 875,648 + SO0854 0.87 -1.2 875,667 + -0.9 875,675 - -0.1 875,708 - -0.0 875,720 + -1.0 875,861 + -0.0 875,869 - +0.4 875,869 - -0.1 875,948 - +0.3 875,999 + -0.1 876,015 - +0.1 876,155 - SO0855 0.18 +0.7 876,200 + SO0855 0.22 +0.4 876,200 + SO0855 0.22 -0.2 876,208 - SO0855 0.22 +0.5 876,239 - SO0855 0.25 -0.7 876,294 - -0.4 876,332 + SO0855 0.32 +0.5 876,342 + SO0855 0.33 +0.4 876,353 + SO0855 0.34 +0.6 876,353 + SO0855 0.34 +1.2 876,464 + SO0855 0.42 +0.0 876,543 - SO0855 0.49 -0.3 876,560 + SO0855 0.50 -2.7 876,670 - SO0855 0.59 +0.1 876,761 + SO0855 0.66 +0.3 876,864 - SO0855 0.74 +0.2 876,938 - SO0855 0.80 +0.3 876,948 + SO0855 0.80 +0.1 876,948 + SO0855 0.80 -0.3 877,127 + -0.3 877,162 - -0.5 877,193 + -0.6 877,201 - +0.2 877,210 - +0.7 877,270 + +0.3 877,298 + +0.5 877,316 - +0.1 877,389 - -0.2 877,535 - SO0856 0.13 +0.0 877,535 - SO0856 0.13 -0.2 877,548 + SO0856 0.13 +0.5 877,579 + SO0856 0.14 +0.6 877,584 + SO0856 0.14 -1.3 877,592 - SO0856 0.15 -0.3 877,680 - SO0856 0.18 +0.1 877,685 - SO0856 0.18 -0.6 877,724 + SO0856 0.20 +0.0 877,799 - SO0856 0.22 +0.4 877,824 - SO0856 0.23 +0.2 877,941 + SO0856 0.28 +0.2 877,949 - SO0856 0.28 +0.0 878,042 + SO0856 0.31 -0.5 878,058 - SO0856 0.32 +0.4 878,121 - SO0856 0.34 +0.7 878,129 - SO0856 0.35 +0.8
Or see this region's nucleotide sequence