Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0625 and SO0627 are separated by 159 nucleotides SO0627 and SO0628 are separated by 171 nucleotides SO0628 and nosA are separated by 206 nucleotides
SO0625: SO0625 - conserved domain protein (NCBI ptt file), at 651,800 to 652,579
SO0625
SO0627: SO0627 - putative 2'-5' RNA ligase (NCBI ptt file), at 652,739 to 653,296
SO0627
SO0628: SO0628 - GGDEF domain protein (NCBI ptt file), at 653,468 to 655,654
SO0628
SO0630: nosA - TonB-dependent receptor (NCBI ptt file), at 655,861 to 657,867
nosA
Position (kb) 653
654
655
656 Strain fitness (log2 ratio) -2
-1
0
1
2 at 652.535 kb on + strand at 652.538 kb on - strand at 652.551 kb on + strand at 652.559 kb on - strand at 652.598 kb on + strand at 652.687 kb on - strand at 652.731 kb on + strand at 652.739 kb on - strand at 652.771 kb on + strand at 652.774 kb on - strand at 652.938 kb on + strand, within SO0627 at 652.997 kb on + strand, within SO0627 at 653.005 kb on - strand, within SO0627 at 653.014 kb on + strand, within SO0627 at 653.033 kb on + strand, within SO0627 at 653.048 kb on + strand, within SO0627 at 653.155 kb on - strand, within SO0627 at 653.288 kb on + strand at 653.296 kb on + strand at 653.296 kb on - strand at 653.304 kb on - strand at 653.418 kb on + strand at 653.538 kb on + strand at 653.600 kb on - strand at 653.643 kb on + strand at 653.687 kb on - strand, within SO0628 at 653.812 kb on + strand, within SO0628 at 653.844 kb on + strand, within SO0628 at 653.852 kb on - strand, within SO0628 at 653.853 kb on + strand, within SO0628 at 653.868 kb on + strand, within SO0628 at 653.892 kb on + strand, within SO0628 at 653.892 kb on + strand, within SO0628 at 653.900 kb on - strand, within SO0628 at 653.900 kb on - strand, within SO0628 at 653.958 kb on - strand, within SO0628 at 654.031 kb on - strand, within SO0628 at 654.038 kb on + strand, within SO0628 at 654.038 kb on + strand, within SO0628 at 654.046 kb on - strand, within SO0628 at 654.046 kb on - strand, within SO0628 at 654.051 kb on - strand, within SO0628 at 654.103 kb on + strand, within SO0628 at 654.142 kb on + strand, within SO0628 at 654.171 kb on + strand, within SO0628 at 654.197 kb on + strand, within SO0628 at 654.267 kb on + strand, within SO0628 at 654.267 kb on + strand, within SO0628 at 654.285 kb on - strand, within SO0628 at 654.374 kb on + strand, within SO0628 at 654.411 kb on - strand, within SO0628 at 654.454 kb on - strand, within SO0628 at 654.470 kb on - strand, within SO0628 at 654.476 kb on + strand, within SO0628 at 654.646 kb on + strand, within SO0628 at 654.661 kb on + strand, within SO0628 at 654.661 kb on + strand, within SO0628 at 654.708 kb on + strand, within SO0628 at 654.783 kb on - strand, within SO0628 at 654.820 kb on + strand, within SO0628 at 654.843 kb on + strand, within SO0628 at 654.851 kb on - strand, within SO0628 at 654.997 kb on - strand, within SO0628 at 655.004 kb on + strand, within SO0628 at 655.050 kb on + strand, within SO0628 at 655.091 kb on - strand, within SO0628 at 655.105 kb on + strand, within SO0628 at 655.119 kb on + strand, within SO0628 at 655.257 kb on - strand, within SO0628 at 655.326 kb on - strand, within SO0628 at 655.490 kb on + strand at 655.498 kb on - strand at 655.498 kb on - strand at 655.511 kb on - strand at 655.577 kb on + strand at 655.585 kb on - strand at 655.623 kb on + strand at 655.631 kb on - strand at 655.638 kb on + strand at 655.647 kb on - strand at 655.758 kb on - strand at 655.899 kb on - strand at 655.934 kb on + strand at 656.022 kb on - strand at 656.172 kb on - strand, within nosA at 656.271 kb on + strand, within nosA at 656.304 kb on + strand, within nosA at 656.356 kb on - strand, within nosA at 656.578 kb on + strand, within nosA at 656.578 kb on + strand, within nosA at 656.586 kb on - strand, within nosA at 656.590 kb on + strand, within nosA at 656.609 kb on - strand, within nosA
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 652,535 + +0.5 652,538 - +0.8 652,551 + +0.3 652,559 - -0.0 652,598 + -0.1 652,687 - -0.5 652,731 + +0.8 652,739 - +0.3 652,771 + +0.1 652,774 - -0.1 652,938 + SO0627 0.36 +1.8 652,997 + SO0627 0.46 -0.7 653,005 - SO0627 0.48 +0.3 653,014 + SO0627 0.49 +0.3 653,033 + SO0627 0.53 +0.3 653,048 + SO0627 0.55 +0.4 653,155 - SO0627 0.75 -0.1 653,288 + +0.7 653,296 + -1.6 653,296 - -0.3 653,304 - +0.4 653,418 + -0.1 653,538 + +0.2 653,600 - -0.3 653,643 + +0.1 653,687 - SO0628 0.10 -0.7 653,812 + SO0628 0.16 -0.1 653,844 + SO0628 0.17 -0.0 653,852 - SO0628 0.18 +0.0 653,853 + SO0628 0.18 +0.1 653,868 + SO0628 0.18 -0.9 653,892 + SO0628 0.19 +0.7 653,892 + SO0628 0.19 +0.6 653,900 - SO0628 0.20 -0.1 653,900 - SO0628 0.20 -0.2 653,958 - SO0628 0.22 +0.6 654,031 - SO0628 0.26 -1.3 654,038 + SO0628 0.26 -0.5 654,038 + SO0628 0.26 -0.0 654,046 - SO0628 0.26 -0.8 654,046 - SO0628 0.26 -1.1 654,051 - SO0628 0.27 -0.4 654,103 + SO0628 0.29 -0.7 654,142 + SO0628 0.31 -0.5 654,171 + SO0628 0.32 +0.2 654,197 + SO0628 0.33 +0.2 654,267 + SO0628 0.37 -0.2 654,267 + SO0628 0.37 -0.2 654,285 - SO0628 0.37 -0.4 654,374 + SO0628 0.41 -2.0 654,411 - SO0628 0.43 -0.3 654,454 - SO0628 0.45 -0.5 654,470 - SO0628 0.46 -0.5 654,476 + SO0628 0.46 -1.1 654,646 + SO0628 0.54 -0.1 654,661 + SO0628 0.55 -0.7 654,661 + SO0628 0.55 -0.3 654,708 + SO0628 0.57 -0.4 654,783 - SO0628 0.60 -0.1 654,820 + SO0628 0.62 -0.4 654,843 + SO0628 0.63 -0.6 654,851 - SO0628 0.63 +0.1 654,997 - SO0628 0.70 -0.9 655,004 + SO0628 0.70 -0.7 655,050 + SO0628 0.72 -0.5 655,091 - SO0628 0.74 +0.2 655,105 + SO0628 0.75 -0.1 655,119 + SO0628 0.75 +0.0 655,257 - SO0628 0.82 -0.1 655,326 - SO0628 0.85 -0.6 655,490 + -0.1 655,498 - +0.2 655,498 - -0.1 655,511 - -0.3 655,577 + -0.4 655,585 - +0.2 655,623 + +0.2 655,631 - -0.0 655,638 + -0.4 655,647 - -0.8 655,758 - +0.3 655,899 - +0.2 655,934 + +0.3 656,022 - +0.5 656,172 - nosA SO0630 0.15 +0.5 656,271 + nosA SO0630 0.20 -0.3 656,304 + nosA SO0630 0.22 -0.9 656,356 - nosA SO0630 0.25 +0.3 656,578 + nosA SO0630 0.36 -0.3 656,578 + nosA SO0630 0.36 +0.4 656,586 - nosA SO0630 0.36 +0.1 656,590 + nosA SO0630 0.36 +0.7 656,609 - nosA SO0630 0.37 +0.3
Or see this region's nucleotide sequence