Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt petB and petC overlap by 1 nucleotides petC and sspA are separated by 96 nucleotides sspA and sspB overlap by 1 nucleotides
SO0609: petB - ubiquinol-cytochrome c reductase, cytochrome b (NCBI ptt file), at 634,389 to 635,603
petB
SO0610: petC - ubiquinol-cytochrome c reductase, cytochrome c1 (NCBI ptt file), at 635,603 to 636,298
petC
SO0611: sspA - stringent starvation protein a (NCBI ptt file), at 636,395 to 637,024
sspA
SO0612: sspB - stringent starvation protein b (NCBI ptt file), at 637,024 to 637,461
sspB
Position (kb) 635
636
637 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 634.631 kb on - strand, within petB at 634.631 kb on - strand, within petB at 634.717 kb on - strand, within petB at 634.929 kb on + strand, within petB at 634.983 kb on + strand, within petB at 635.012 kb on + strand, within petB at 635.032 kb on + strand, within petB at 635.123 kb on - strand, within petB at 635.190 kb on + strand, within petB at 635.222 kb on + strand, within petB at 635.239 kb on + strand, within petB at 635.242 kb on - strand, within petB at 635.360 kb on + strand, within petB at 635.360 kb on + strand, within petB at 635.701 kb on + strand, within petC at 636.333 kb on + strand at 636.346 kb on + strand at 636.500 kb on - strand, within sspA at 636.584 kb on - strand, within sspA at 636.717 kb on - strand, within sspA at 636.727 kb on - strand, within sspA at 636.845 kb on + strand, within sspA at 636.878 kb on + strand, within sspA at 636.878 kb on + strand, within sspA at 636.898 kb on + strand, within sspA at 636.934 kb on - strand, within sspA at 637.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 634,631 - petB SO0609 0.20 -3.5 634,631 - petB SO0609 0.20 -3.0 634,717 - petB SO0609 0.27 -2.8 634,929 + petB SO0609 0.44 -3.6 634,983 + petB SO0609 0.49 -1.0 635,012 + petB SO0609 0.51 -3.1 635,032 + petB SO0609 0.53 -3.0 635,123 - petB SO0609 0.60 -3.7 635,190 + petB SO0609 0.66 -5.0 635,222 + petB SO0609 0.69 -2.3 635,239 + petB SO0609 0.70 -2.9 635,242 - petB SO0609 0.70 -2.7 635,360 + petB SO0609 0.80 -2.3 635,360 + petB SO0609 0.80 -2.4 635,701 + petC SO0610 0.14 -4.5 636,333 + +2.6 636,346 + +1.8 636,500 - sspA SO0611 0.17 +3.3 636,584 - sspA SO0611 0.30 +3.5 636,717 - sspA SO0611 0.51 +3.6 636,727 - sspA SO0611 0.53 +3.2 636,845 + sspA SO0611 0.71 +3.8 636,878 + sspA SO0611 0.77 +3.8 636,878 + sspA SO0611 0.77 +3.3 636,898 + sspA SO0611 0.80 +4.1 636,934 - sspA SO0611 0.86 +3.7 637,064 - +3.3
Or see this region's nucleotide sequence