Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0320 and SO0321 are separated by 96 nucleotides SO0321 and SO0322 are separated by 99 nucleotides SO0322 and SO0323 are separated by 138 nucleotides
SO0320: SO0320 - conserved domain protein (NCBI ptt file), at 326,595 to 327,602
SO0320
SO0321: SO0321 - hypothetical protein (NCBI ptt file), at 327,699 to 328,301
SO0321
SO0322: SO0322 - hypothetical protein (NCBI ptt file), at 328,401 to 328,982
SO0322
SO0323: SO0323 - hypothetical protein (NCBI ptt file), at 329,121 to 330,053
SO0323
Position (kb) 328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 327.431 kb on + strand, within SO0320 at 327.431 kb on + strand, within SO0320 at 327.431 kb on + strand, within SO0320 at 327.431 kb on + strand, within SO0320 at 327.439 kb on - strand, within SO0320 at 327.439 kb on - strand, within SO0320 at 327.439 kb on - strand, within SO0320 at 327.483 kb on - strand, within SO0320 at 327.621 kb on + strand at 327.629 kb on - strand at 327.834 kb on + strand, within SO0321 at 327.931 kb on - strand, within SO0321 at 327.957 kb on + strand, within SO0321 at 327.976 kb on - strand, within SO0321 at 328.157 kb on - strand, within SO0321 at 328.212 kb on + strand, within SO0321 at 328.268 kb on + strand at 328.308 kb on - strand at 328.474 kb on + strand, within SO0322 at 328.505 kb on - strand, within SO0322 at 328.530 kb on + strand, within SO0322 at 328.538 kb on - strand, within SO0322 at 328.538 kb on - strand, within SO0322 at 328.540 kb on + strand, within SO0322 at 328.598 kb on + strand, within SO0322 at 328.643 kb on - strand at 328.661 kb on + strand, within SO0322 at 328.686 kb on + strand, within SO0322 at 328.689 kb on - strand, within SO0322 at 328.689 kb on - strand, within SO0322 at 328.694 kb on - strand, within SO0322 at 328.743 kb on + strand, within SO0322 at 328.743 kb on + strand, within SO0322 at 328.751 kb on - strand, within SO0322 at 328.753 kb on + strand, within SO0322 at 328.894 kb on + strand, within SO0322 at 328.894 kb on + strand, within SO0322 at 328.945 kb on - strand at 328.947 kb on + strand at 328.965 kb on + strand at 328.965 kb on - strand at 329.013 kb on + strand at 329.018 kb on + strand at 329.018 kb on + strand at 329.026 kb on - strand at 329.026 kb on - strand at 329.041 kb on + strand at 329.041 kb on + strand at 329.041 kb on + strand at 329.041 kb on + strand at 329.041 kb on + strand at 329.049 kb on - strand at 329.049 kb on - strand at 329.049 kb on - strand at 329.049 kb on - strand at 329.059 kb on - strand at 329.207 kb on + strand at 329.207 kb on + strand at 329.215 kb on - strand, within SO0323 at 329.242 kb on + strand, within SO0323 at 329.242 kb on + strand, within SO0323 at 329.297 kb on + strand, within SO0323 at 329.297 kb on + strand, within SO0323 at 329.297 kb on + strand, within SO0323 at 329.305 kb on - strand, within SO0323 at 329.348 kb on - strand, within SO0323 at 329.357 kb on - strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.486 kb on - strand, within SO0323 at 329.569 kb on + strand, within SO0323 at 329.694 kb on + strand, within SO0323 at 329.702 kb on - strand, within SO0323 at 329.702 kb on - strand, within SO0323 at 329.718 kb on + strand, within SO0323 at 329.726 kb on - strand, within SO0323 at 329.764 kb on - strand, within SO0323 at 329.768 kb on + strand, within SO0323 at 329.768 kb on + strand, within SO0323 at 329.791 kb on + strand, within SO0323 at 329.796 kb on + strand, within SO0323 at 329.930 kb on + strand, within SO0323 at 329.951 kb on + strand, within SO0323
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 327,431 + SO0320 0.83 -1.2 327,431 + SO0320 0.83 -1.1 327,431 + SO0320 0.83 -1.2 327,431 + SO0320 0.83 -1.2 327,439 - SO0320 0.84 -3.1 327,439 - SO0320 0.84 -1.6 327,439 - SO0320 0.84 -0.6 327,483 - SO0320 0.88 -0.4 327,621 + -0.2 327,629 - +0.3 327,834 + SO0321 0.22 -0.6 327,931 - SO0321 0.38 +0.7 327,957 + SO0321 0.43 -0.7 327,976 - SO0321 0.46 +0.3 328,157 - SO0321 0.76 +0.9 328,212 + SO0321 0.85 +1.4 328,268 + +1.3 328,308 - -0.0 328,474 + SO0322 0.13 +0.2 328,505 - SO0322 0.18 +0.1 328,530 + SO0322 0.22 +0.5 328,538 - SO0322 0.24 +0.3 328,538 - SO0322 0.24 -0.1 328,540 + SO0322 0.24 +0.1 328,598 + SO0322 0.34 +0.5 328,643 - +1.4 328,661 + SO0322 0.45 +1.1 328,686 + SO0322 0.49 +0.4 328,689 - SO0322 0.49 -0.0 328,689 - SO0322 0.49 +1.3 328,694 - SO0322 0.50 +0.4 328,743 + SO0322 0.59 -0.0 328,743 + SO0322 0.59 +0.0 328,751 - SO0322 0.60 +2.5 328,753 + SO0322 0.60 -0.2 328,894 + SO0322 0.85 +0.1 328,894 + SO0322 0.85 +0.3 328,945 - +0.3 328,947 + -0.2 328,965 + -0.8 328,965 - +0.3 329,013 + +0.0 329,018 + +0.2 329,018 + -0.4 329,026 - +2.3 329,026 - +0.9 329,041 + +0.3 329,041 + -0.0 329,041 + -0.2 329,041 + +0.6 329,041 + -0.1 329,049 - -0.5 329,049 - +0.2 329,049 - +1.0 329,049 - +0.6 329,059 - +1.1 329,207 + -0.1 329,207 + +0.2 329,215 - SO0323 0.10 +0.6 329,242 + SO0323 0.13 -0.3 329,242 + SO0323 0.13 +0.3 329,297 + SO0323 0.19 +1.4 329,297 + SO0323 0.19 +0.0 329,297 + SO0323 0.19 -0.1 329,305 - SO0323 0.20 -0.1 329,348 - SO0323 0.24 +0.7 329,357 - SO0323 0.25 +0.4 329,477 + SO0323 0.38 -0.5 329,477 + SO0323 0.38 -0.5 329,477 + SO0323 0.38 +0.5 329,477 + SO0323 0.38 +0.3 329,477 + SO0323 0.38 +0.4 329,477 + SO0323 0.38 -1.0 329,485 - SO0323 0.39 +0.1 329,485 - SO0323 0.39 -0.0 329,485 - SO0323 0.39 +0.0 329,485 - SO0323 0.39 +0.2 329,485 - SO0323 0.39 +0.0 329,485 - SO0323 0.39 +0.6 329,486 - SO0323 0.39 +0.8 329,569 + SO0323 0.48 -0.3 329,694 + SO0323 0.61 +0.2 329,702 - SO0323 0.62 +0.1 329,702 - SO0323 0.62 +0.2 329,718 + SO0323 0.64 +0.1 329,726 - SO0323 0.65 -0.2 329,764 - SO0323 0.69 +0.2 329,768 + SO0323 0.69 +0.3 329,768 + SO0323 0.69 +0.2 329,791 + SO0323 0.72 -0.8 329,796 + SO0323 0.72 +0.7 329,930 + SO0323 0.87 +0.5 329,951 + SO0323 0.89 -0.2
Or see this region's nucleotide sequence