Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_715 and HP15_716 are separated by 165 nucleotides HP15_716 and HP15_717 are separated by 51 nucleotides HP15_717 and HP15_718 are separated by 40 nucleotides
HP15_715: HP15_715 - deoxyribodipyrimidine photolyase, at 723,940 to 725,343
_715
HP15_716: HP15_716 - conserved hypothetical protein, at 725,509 to 726,318
_716
HP15_717: HP15_717 - MscS Mechanosensitive ion channel, at 726,370 to 727,230
_717
HP15_718: HP15_718 - ribosomal protein S6 modification protein-like protein, at 727,271 to 727,708
_718
Position (kb) 725
726
727 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 724.636 kb on - strand, within HP15_715 at 724.712 kb on + strand, within HP15_715 at 724.758 kb on - strand, within HP15_715 at 724.760 kb on - strand, within HP15_715 at 724.794 kb on + strand, within HP15_715 at 724.808 kb on + strand, within HP15_715 at 724.816 kb on - strand, within HP15_715 at 724.898 kb on + strand, within HP15_715 at 724.906 kb on - strand, within HP15_715 at 724.922 kb on - strand, within HP15_715 at 724.997 kb on + strand, within HP15_715 at 725.003 kb on - strand, within HP15_715 at 725.022 kb on + strand, within HP15_715 at 725.022 kb on + strand, within HP15_715 at 725.030 kb on + strand, within HP15_715 at 725.042 kb on + strand, within HP15_715 at 725.055 kb on - strand, within HP15_715 at 725.097 kb on + strand, within HP15_715 at 725.129 kb on - strand, within HP15_715 at 725.156 kb on + strand, within HP15_715 at 725.176 kb on - strand, within HP15_715 at 725.176 kb on - strand, within HP15_715 at 725.259 kb on + strand at 725.468 kb on - strand at 725.548 kb on - strand at 725.553 kb on + strand at 725.561 kb on - strand at 725.575 kb on - strand at 725.595 kb on + strand, within HP15_716 at 725.643 kb on - strand, within HP15_716 at 725.709 kb on + strand, within HP15_716 at 725.868 kb on + strand, within HP15_716 at 725.880 kb on + strand, within HP15_716 at 725.984 kb on - strand, within HP15_716 at 726.080 kb on - strand, within HP15_716 at 726.147 kb on + strand, within HP15_716 at 726.155 kb on - strand, within HP15_716 at 726.155 kb on - strand, within HP15_716 at 726.155 kb on - strand, within HP15_716 at 726.155 kb on - strand, within HP15_716 at 726.499 kb on - strand, within HP15_717 at 726.648 kb on - strand, within HP15_717 at 726.683 kb on - strand, within HP15_717 at 726.727 kb on - strand, within HP15_717 at 726.757 kb on - strand, within HP15_717 at 726.762 kb on - strand, within HP15_717 at 726.809 kb on + strand, within HP15_717 at 726.824 kb on + strand, within HP15_717 at 726.832 kb on - strand, within HP15_717 at 726.832 kb on - strand, within HP15_717 at 726.871 kb on - strand, within HP15_717 at 726.875 kb on - strand, within HP15_717 at 726.891 kb on + strand, within HP15_717 at 726.909 kb on + strand, within HP15_717 at 726.971 kb on - strand, within HP15_717 at 727.156 kb on - strand at 727.166 kb on - strand at 727.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 724,636 - HP15_715 0.50 +2.0 724,712 + HP15_715 0.55 +0.5 724,758 - HP15_715 0.58 -0.7 724,760 - HP15_715 0.58 +0.6 724,794 + HP15_715 0.61 -3.7 724,808 + HP15_715 0.62 +0.6 724,816 - HP15_715 0.62 +0.2 724,898 + HP15_715 0.68 -2.1 724,906 - HP15_715 0.69 +0.7 724,922 - HP15_715 0.70 -2.7 724,997 + HP15_715 0.75 -1.3 725,003 - HP15_715 0.76 +1.2 725,022 + HP15_715 0.77 -1.8 725,022 + HP15_715 0.77 -2.1 725,030 + HP15_715 0.78 +0.3 725,042 + HP15_715 0.78 -1.9 725,055 - HP15_715 0.79 -2.5 725,097 + HP15_715 0.82 -0.2 725,129 - HP15_715 0.85 +0.2 725,156 + HP15_715 0.87 +0.7 725,176 - HP15_715 0.88 +1.7 725,176 - HP15_715 0.88 +0.2 725,259 + +0.3 725,468 - +0.4 725,548 - -4.5 725,553 + +0.2 725,561 - -0.3 725,575 - -0.7 725,595 + HP15_716 0.11 +1.7 725,643 - HP15_716 0.17 -1.4 725,709 + HP15_716 0.25 -2.8 725,868 + HP15_716 0.44 -0.7 725,880 + HP15_716 0.46 +0.7 725,984 - HP15_716 0.59 -1.0 726,080 - HP15_716 0.70 -0.1 726,147 + HP15_716 0.79 -0.5 726,155 - HP15_716 0.80 -0.8 726,155 - HP15_716 0.80 -4.7 726,155 - HP15_716 0.80 -1.2 726,155 - HP15_716 0.80 -0.1 726,499 - HP15_717 0.15 -1.0 726,648 - HP15_717 0.32 -0.9 726,683 - HP15_717 0.36 -1.1 726,727 - HP15_717 0.41 -0.8 726,757 - HP15_717 0.45 -2.0 726,762 - HP15_717 0.46 -0.5 726,809 + HP15_717 0.51 +1.1 726,824 + HP15_717 0.53 -0.6 726,832 - HP15_717 0.54 +0.2 726,832 - HP15_717 0.54 +0.1 726,871 - HP15_717 0.58 -1.9 726,875 - HP15_717 0.59 +1.1 726,891 + HP15_717 0.61 -0.8 726,909 + HP15_717 0.63 -0.4 726,971 - HP15_717 0.70 -0.1 727,156 - +0.9 727,166 - +0.4 727,293 + -1.9
Or see this region's nucleotide sequence