Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_654 and HP15_655 are separated by 90 nucleotides HP15_655 and HP15_656 are separated by 28 nucleotides HP15_656 and HP15_657 are separated by 9 nucleotides
HP15_654: HP15_654 - major tail sheath protein, at 675,391 to 676,908
_654
HP15_655: HP15_655 - phage tail collar domain protein-like protein, at 676,999 to 677,463
_655
HP15_656: HP15_656 - tail fiber assembly protein-like protein, at 677,492 to 677,773
_656
HP15_657: HP15_657 - phage tail fiber protein, at 677,783 to 679,219
_657
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 676.061 kb on - strand, within HP15_654 at 676.063 kb on + strand, within HP15_654 at 676.069 kb on - strand, within HP15_654 at 676.071 kb on - strand, within HP15_654 at 676.130 kb on + strand, within HP15_654 at 676.160 kb on + strand, within HP15_654 at 676.173 kb on - strand, within HP15_654 at 676.221 kb on + strand, within HP15_654 at 676.221 kb on + strand, within HP15_654 at 676.224 kb on - strand, within HP15_654 at 676.308 kb on - strand, within HP15_654 at 676.379 kb on + strand, within HP15_654 at 676.452 kb on - strand, within HP15_654 at 676.455 kb on + strand, within HP15_654 at 676.520 kb on - strand, within HP15_654 at 676.539 kb on - strand, within HP15_654 at 676.539 kb on - strand, within HP15_654 at 676.544 kb on - strand, within HP15_654 at 676.564 kb on - strand, within HP15_654 at 676.654 kb on + strand, within HP15_654 at 676.662 kb on - strand, within HP15_654 at 676.881 kb on + strand at 676.881 kb on + strand at 676.889 kb on - strand at 676.889 kb on - strand at 676.935 kb on - strand at 677.150 kb on - strand, within HP15_655 at 677.249 kb on - strand, within HP15_655 at 677.249 kb on - strand, within HP15_655 at 677.326 kb on - strand, within HP15_655 at 677.405 kb on - strand, within HP15_655 at 677.434 kb on - strand at 677.439 kb on - strand at 677.498 kb on - strand at 677.545 kb on - strand, within HP15_656 at 677.582 kb on - strand, within HP15_656 at 677.582 kb on - strand, within HP15_656 at 677.733 kb on + strand, within HP15_656 at 677.736 kb on - strand, within HP15_656 at 677.793 kb on + strand at 677.793 kb on + strand at 677.865 kb on - strand at 678.000 kb on + strand, within HP15_657 at 678.040 kb on - strand, within HP15_657 at 678.052 kb on - strand, within HP15_657 at 678.092 kb on + strand, within HP15_657 at 678.130 kb on - strand, within HP15_657 at 678.130 kb on - strand, within HP15_657 at 678.146 kb on - strand, within HP15_657 at 678.201 kb on + strand, within HP15_657 at 678.273 kb on - strand, within HP15_657 at 678.319 kb on - strand, within HP15_657 at 678.333 kb on - strand, within HP15_657 at 678.409 kb on + strand, within HP15_657 at 678.409 kb on - strand, within HP15_657
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 676,061 - HP15_654 0.44 -0.2 676,063 + HP15_654 0.44 +0.7 676,069 - HP15_654 0.45 +1.0 676,071 - HP15_654 0.45 +1.8 676,130 + HP15_654 0.49 +0.6 676,160 + HP15_654 0.51 +0.8 676,173 - HP15_654 0.52 +0.7 676,221 + HP15_654 0.55 -0.8 676,221 + HP15_654 0.55 -0.3 676,224 - HP15_654 0.55 +0.8 676,308 - HP15_654 0.60 -0.1 676,379 + HP15_654 0.65 +1.1 676,452 - HP15_654 0.70 +0.0 676,455 + HP15_654 0.70 -0.6 676,520 - HP15_654 0.74 +0.8 676,539 - HP15_654 0.76 +1.5 676,539 - HP15_654 0.76 -1.4 676,544 - HP15_654 0.76 +2.2 676,564 - HP15_654 0.77 +0.7 676,654 + HP15_654 0.83 +0.0 676,662 - HP15_654 0.84 +0.9 676,881 + -0.8 676,881 + +2.5 676,889 - +0.5 676,889 - -0.1 676,935 - +0.3 677,150 - HP15_655 0.32 -2.7 677,249 - HP15_655 0.54 -2.1 677,249 - HP15_655 0.54 -1.6 677,326 - HP15_655 0.70 +0.7 677,405 - HP15_655 0.87 +0.8 677,434 - +1.3 677,439 - +1.0 677,498 - -1.1 677,545 - HP15_656 0.19 +0.6 677,582 - HP15_656 0.32 -0.3 677,582 - HP15_656 0.32 -0.4 677,733 + HP15_656 0.85 -0.5 677,736 - HP15_656 0.87 +0.7 677,793 + +1.3 677,793 + +0.4 677,865 - +0.9 678,000 + HP15_657 0.15 +0.0 678,040 - HP15_657 0.18 +1.6 678,052 - HP15_657 0.19 -0.1 678,092 + HP15_657 0.22 -0.1 678,130 - HP15_657 0.24 -0.3 678,130 - HP15_657 0.24 +1.0 678,146 - HP15_657 0.25 -1.7 678,201 + HP15_657 0.29 +1.0 678,273 - HP15_657 0.34 +0.7 678,319 - HP15_657 0.37 -0.4 678,333 - HP15_657 0.38 -1.1 678,409 + HP15_657 0.44 -0.8 678,409 - HP15_657 0.44 -1.4
Or see this region's nucleotide sequence