Strain Fitness in Marinobacter adhaerens HP15 around HP15_4151

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4150 and HP15_4151 are separated by 5 nucleotidesHP15_4151 and HP15_4152 are separated by 770 nucleotides HP15_4150: HP15_4150 - sensory box/GGDEF family protein, at 4,385,544 to 4,387,202 _4150 HP15_4151: HP15_4151 - GGDEF domain-like protein, at 4,387,208 to 4,388,401 _4151 HP15_4152: HP15_4152 - conserved hypothetical protein, at 4,389,172 to 4,389,951 _4152 Position (kb) 4387 4388 4389Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4386.249 kb on + strand, within HP15_4150at 4386.282 kb on + strand, within HP15_4150at 4386.290 kb on - strand, within HP15_4150at 4386.411 kb on - strand, within HP15_4150at 4386.411 kb on - strand, within HP15_4150at 4386.520 kb on + strand, within HP15_4150at 4386.657 kb on - strand, within HP15_4150at 4386.657 kb on - strand, within HP15_4150at 4386.664 kb on - strand, within HP15_4150at 4386.882 kb on + strand, within HP15_4150at 4386.978 kb on - strand, within HP15_4150at 4386.993 kb on - strand, within HP15_4150at 4387.011 kb on + strand, within HP15_4150at 4387.020 kb on + strand, within HP15_4150at 4387.142 kb on + strandat 4387.264 kb on - strandat 4387.295 kb on + strandat 4387.295 kb on + strandat 4387.303 kb on - strandat 4387.303 kb on - strandat 4387.303 kb on - strandat 4387.303 kb on - strandat 4387.333 kb on + strand, within HP15_4151at 4387.353 kb on - strand, within HP15_4151at 4387.492 kb on + strand, within HP15_4151at 4387.520 kb on + strand, within HP15_4151at 4387.597 kb on + strand, within HP15_4151at 4387.626 kb on + strand, within HP15_4151at 4387.627 kb on - strand, within HP15_4151at 4387.724 kb on - strand, within HP15_4151at 4387.804 kb on + strand, within HP15_4151at 4387.812 kb on - strand, within HP15_4151at 4387.812 kb on - strand, within HP15_4151at 4387.812 kb on - strand, within HP15_4151at 4387.849 kb on - strand, within HP15_4151at 4387.949 kb on - strand, within HP15_4151at 4388.042 kb on - strand, within HP15_4151at 4388.042 kb on - strand, within HP15_4151at 4388.042 kb on - strand, within HP15_4151at 4388.042 kb on - strand, within HP15_4151at 4388.042 kb on - strand, within HP15_4151at 4388.167 kb on - strand, within HP15_4151at 4388.203 kb on + strand, within HP15_4151at 4388.257 kb on + strand, within HP15_4151at 4388.283 kb on - strandat 4388.586 kb on + strandat 4388.637 kb on + strandat 4388.675 kb on - strandat 4388.675 kb on - strandat 4388.703 kb on - strandat 4388.705 kb on + strandat 4388.728 kb on + strandat 4388.743 kb on + strandat 4388.743 kb on + strandat 4388.751 kb on - strandat 4388.876 kb on - strandat 4388.975 kb on - strandat 4388.991 kb on + strandat 4388.997 kb on - strandat 4389.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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4,386,249 + HP15_4150 0.42 +0.4
4,386,282 + HP15_4150 0.44 -0.2
4,386,290 - HP15_4150 0.45 +1.8
4,386,411 - HP15_4150 0.52 +0.4
4,386,411 - HP15_4150 0.52 -1.0
4,386,520 + HP15_4150 0.59 -0.6
4,386,657 - HP15_4150 0.67 +1.8
4,386,657 - HP15_4150 0.67 +2.1
4,386,664 - HP15_4150 0.68 +0.6
4,386,882 + HP15_4150 0.81 -1.2
4,386,978 - HP15_4150 0.86 +0.2
4,386,993 - HP15_4150 0.87 -0.8
4,387,011 + HP15_4150 0.88 +0.4
4,387,020 + HP15_4150 0.89 +0.4
4,387,142 + +0.1
4,387,264 - -0.8
4,387,295 + +0.4
4,387,295 + -0.5
4,387,303 - -0.4
4,387,303 - +0.3
4,387,303 - -0.2
4,387,303 - +0.2
4,387,333 + HP15_4151 0.10 +1.3
4,387,353 - HP15_4151 0.12 +0.4
4,387,492 + HP15_4151 0.24 +1.1
4,387,520 + HP15_4151 0.26 +0.0
4,387,597 + HP15_4151 0.33 -1.6
4,387,626 + HP15_4151 0.35 +2.4
4,387,627 - HP15_4151 0.35 +1.2
4,387,724 - HP15_4151 0.43 -3.2
4,387,804 + HP15_4151 0.50 -0.2
4,387,812 - HP15_4151 0.51 +0.1
4,387,812 - HP15_4151 0.51 +2.4
4,387,812 - HP15_4151 0.51 +0.6
4,387,849 - HP15_4151 0.54 +2.3
4,387,949 - HP15_4151 0.62 -0.1
4,388,042 - HP15_4151 0.70 -2.4
4,388,042 - HP15_4151 0.70 +0.5
4,388,042 - HP15_4151 0.70 +0.4
4,388,042 - HP15_4151 0.70 +1.8
4,388,042 - HP15_4151 0.70 -0.3
4,388,167 - HP15_4151 0.80 -1.5
4,388,203 + HP15_4151 0.83 +1.6
4,388,257 + HP15_4151 0.88 -3.7
4,388,283 - +1.9
4,388,586 + -1.0
4,388,637 + -1.5
4,388,675 - -0.6
4,388,675 - +0.9
4,388,703 - -0.8
4,388,705 + -0.3
4,388,728 + -0.2
4,388,743 + -3.0
4,388,743 + +0.1
4,388,751 - -0.5
4,388,876 - -1.8
4,388,975 - -0.9
4,388,991 + +0.1
4,388,997 - -0.6
4,389,235 + +2.1

Or see this region's nucleotide sequence