Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4088 and HP15_4089 overlap by 4 nucleotides HP15_4089 and HP15_4090 overlap by 4 nucleotides HP15_4090 and HP15_4091 overlap by 4 nucleotides
HP15_4088: HP15_4088 - L-lactate dehydrogenase, LutA subunit (from data) , at 4,320,585 to 4,321,424
_4088
HP15_4089: HP15_4089 - L-lactate dehydrogenase, LutB subunit (from data) , at 4,321,421 to 4,322,872
_4089
HP15_4090: HP15_4090 - L-lactate dehydrogenase, LutC subunit (from data) , at 4,322,869 to 4,323,540
_4090
HP15_4091: HP15_4091 - oxidoreductase, FAD/iron-sulfur cluster-binding domain protein, at 4,323,537 to 4,326,353
_4091
Position (kb)
4321
4322
4323 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4320.436 kb on - strand at 4320.626 kb on + strand at 4320.626 kb on + strand at 4320.658 kb on + strand at 4320.705 kb on + strand, within HP15_4088 at 4320.801 kb on - strand, within HP15_4088 at 4320.833 kb on + strand, within HP15_4088 at 4320.833 kb on + strand, within HP15_4088 at 4320.841 kb on - strand, within HP15_4088 at 4320.929 kb on + strand, within HP15_4088 at 4321.002 kb on + strand, within HP15_4088 at 4321.005 kb on - strand, within HP15_4088 at 4321.131 kb on - strand, within HP15_4088 at 4321.142 kb on + strand, within HP15_4088 at 4321.415 kb on + strand at 4321.452 kb on + strand at 4321.483 kb on - strand at 4321.546 kb on + strand at 4321.575 kb on + strand, within HP15_4089 at 4321.682 kb on - strand, within HP15_4089 at 4321.684 kb on + strand, within HP15_4089 at 4321.780 kb on - strand, within HP15_4089 at 4321.836 kb on + strand, within HP15_4089 at 4321.927 kb on + strand, within HP15_4089 at 4321.971 kb on + strand, within HP15_4089 at 4322.039 kb on - strand, within HP15_4089 at 4322.174 kb on - strand, within HP15_4089 at 4322.246 kb on + strand, within HP15_4089 at 4322.254 kb on - strand, within HP15_4089 at 4322.263 kb on + strand, within HP15_4089 at 4322.286 kb on + strand, within HP15_4089 at 4322.294 kb on + strand, within HP15_4089 at 4322.309 kb on + strand, within HP15_4089 at 4322.405 kb on + strand, within HP15_4089 at 4322.405 kb on + strand, within HP15_4089 at 4322.405 kb on + strand, within HP15_4089 at 4322.413 kb on - strand, within HP15_4089 at 4322.413 kb on - strand, within HP15_4089 at 4322.428 kb on + strand, within HP15_4089 at 4322.440 kb on + strand, within HP15_4089 at 4322.440 kb on + strand, within HP15_4089 at 4322.445 kb on + strand, within HP15_4089 at 4322.448 kb on - strand, within HP15_4089 at 4322.448 kb on - strand, within HP15_4089 at 4322.448 kb on - strand, within HP15_4089 at 4322.448 kb on - strand, within HP15_4089 at 4322.448 kb on - strand, within HP15_4089 at 4322.448 kb on - strand, within HP15_4089 at 4322.453 kb on - strand, within HP15_4089 at 4322.464 kb on + strand, within HP15_4089 at 4322.472 kb on - strand, within HP15_4089 at 4322.498 kb on + strand, within HP15_4089 at 4322.536 kb on - strand, within HP15_4089 at 4322.568 kb on + strand, within HP15_4089 at 4322.568 kb on + strand, within HP15_4089 at 4322.618 kb on - strand, within HP15_4089 at 4322.781 kb on - strand at 4322.841 kb on + strand at 4322.851 kb on + strand at 4322.859 kb on - strand at 4322.863 kb on + strand at 4322.955 kb on + strand, within HP15_4090 at 4322.963 kb on - strand, within HP15_4090 at 4323.034 kb on - strand, within HP15_4090 at 4323.103 kb on + strand, within HP15_4090 at 4323.155 kb on - strand, within HP15_4090 at 4323.225 kb on + strand, within HP15_4090 at 4323.233 kb on + strand, within HP15_4090 at 4323.233 kb on - strand, within HP15_4090 at 4323.233 kb on - strand, within HP15_4090 at 4323.233 kb on - strand, within HP15_4090 at 4323.313 kb on - strand, within HP15_4090 at 4323.344 kb on + strand, within HP15_4090 at 4323.352 kb on - strand, within HP15_4090 at 4323.362 kb on - strand, within HP15_4090 at 4323.362 kb on - strand, within HP15_4090 at 4323.400 kb on + strand, within HP15_4090 at 4323.431 kb on - strand, within HP15_4090 at 4323.451 kb on - strand, within HP15_4090 at 4323.485 kb on - strand at 4323.491 kb on - strand at 4323.533 kb on + strand at 4323.616 kb on + strand at 4323.655 kb on + strand at 4323.693 kb on - strand at 4323.754 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 4,320,436 - -0.2 4,320,626 + +0.4 4,320,626 + +0.7 4,320,658 + +0.3 4,320,705 + HP15_4088 0.14 +2.4 4,320,801 - HP15_4088 0.26 +1.9 4,320,833 + HP15_4088 0.30 +1.7 4,320,833 + HP15_4088 0.30 +0.1 4,320,841 - HP15_4088 0.30 -0.2 4,320,929 + HP15_4088 0.41 +2.7 4,321,002 + HP15_4088 0.50 -1.4 4,321,005 - HP15_4088 0.50 +2.3 4,321,131 - HP15_4088 0.65 +1.1 4,321,142 + HP15_4088 0.66 +1.4 4,321,415 + +1.2 4,321,452 + +0.2 4,321,483 - -1.8 4,321,546 + +0.2 4,321,575 + HP15_4089 0.11 +2.4 4,321,682 - HP15_4089 0.18 -1.8 4,321,684 + HP15_4089 0.18 -0.2 4,321,780 - HP15_4089 0.25 +0.4 4,321,836 + HP15_4089 0.29 -3.9 4,321,927 + HP15_4089 0.35 +1.1 4,321,971 + HP15_4089 0.38 +2.6 4,322,039 - HP15_4089 0.43 +1.3 4,322,174 - HP15_4089 0.52 +1.4 4,322,246 + HP15_4089 0.57 -0.1 4,322,254 - HP15_4089 0.57 -0.7 4,322,263 + HP15_4089 0.58 +1.2 4,322,286 + HP15_4089 0.60 +0.4 4,322,294 + HP15_4089 0.60 -2.0 4,322,309 + HP15_4089 0.61 -1.7 4,322,405 + HP15_4089 0.68 +1.1 4,322,405 + HP15_4089 0.68 +0.2 4,322,405 + HP15_4089 0.68 -2.9 4,322,413 - HP15_4089 0.68 +0.6 4,322,413 - HP15_4089 0.68 -1.8 4,322,428 + HP15_4089 0.69 +1.6 4,322,440 + HP15_4089 0.70 +1.3 4,322,440 + HP15_4089 0.70 -0.3 4,322,445 + HP15_4089 0.71 +1.6 4,322,448 - HP15_4089 0.71 +2.1 4,322,448 - HP15_4089 0.71 +2.2 4,322,448 - HP15_4089 0.71 -0.4 4,322,448 - HP15_4089 0.71 +1.6 4,322,448 - HP15_4089 0.71 +2.7 4,322,448 - HP15_4089 0.71 +2.7 4,322,453 - HP15_4089 0.71 +2.4 4,322,464 + HP15_4089 0.72 -0.3 4,322,472 - HP15_4089 0.72 -0.5 4,322,498 + HP15_4089 0.74 +0.4 4,322,536 - HP15_4089 0.77 -0.2 4,322,568 + HP15_4089 0.79 +1.2 4,322,568 + HP15_4089 0.79 -2.9 4,322,618 - HP15_4089 0.82 +1.1 4,322,781 - +0.1 4,322,841 + -0.4 4,322,851 + +1.1 4,322,859 - +1.3 4,322,863 + -2.8 4,322,955 + HP15_4090 0.13 -0.2 4,322,963 - HP15_4090 0.14 +1.0 4,323,034 - HP15_4090 0.25 +1.3 4,323,103 + HP15_4090 0.35 +2.7 4,323,155 - HP15_4090 0.43 +1.5 4,323,225 + HP15_4090 0.53 -2.2 4,323,233 + HP15_4090 0.54 +1.6 4,323,233 - HP15_4090 0.54 +0.3 4,323,233 - HP15_4090 0.54 -1.9 4,323,233 - HP15_4090 0.54 +2.0 4,323,313 - HP15_4090 0.66 -1.2 4,323,344 + HP15_4090 0.71 -3.8 4,323,352 - HP15_4090 0.72 -2.2 4,323,362 - HP15_4090 0.73 +2.0 4,323,362 - HP15_4090 0.73 -1.3 4,323,400 + HP15_4090 0.79 -1.4 4,323,431 - HP15_4090 0.84 +1.1 4,323,451 - HP15_4090 0.87 +2.2 4,323,485 - -0.5 4,323,491 - +0.6 4,323,533 + -0.3 4,323,616 + -3.0 4,323,655 + +1.5 4,323,693 - +1.6 4,323,754 + +0.6
Or see this region's nucleotide sequence