Strain Fitness in Marinobacter adhaerens HP15 around HP15_3895

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3893 and HP15_3894 are separated by 131 nucleotidesHP15_3894 and HP15_3895 are separated by 17 nucleotidesHP15_3895 and HP15_3896 are separated by 59 nucleotides HP15_3893: HP15_3893 - amidase family protein, at 4,123,368 to 4,124,867 _3893 HP15_3894: HP15_3894 - conserved hypothetical protein, at 4,124,999 to 4,125,616 _3894 HP15_3895: HP15_3895 - conserved hypothetical protein, membrane, at 4,125,634 to 4,126,701 _3895 HP15_3896: HP15_3896 - hypothetical protein putative signal peptide-like protein, at 4,126,761 to 4,127,879 _3896 Position (kb) 4125 4126 4127Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4124.739 kb on + strandat 4124.810 kb on + strandat 4125.041 kb on - strandat 4125.049 kb on + strandat 4125.094 kb on - strand, within HP15_3894at 4125.094 kb on - strand, within HP15_3894at 4125.176 kb on + strand, within HP15_3894at 4125.214 kb on - strand, within HP15_3894at 4125.261 kb on - strand, within HP15_3894at 4125.308 kb on - strand, within HP15_3894at 4125.320 kb on + strand, within HP15_3894at 4125.383 kb on - strand, within HP15_3894at 4125.477 kb on + strand, within HP15_3894at 4125.526 kb on + strand, within HP15_3894at 4125.576 kb on + strandat 4125.610 kb on + strandat 4125.610 kb on + strandat 4125.637 kb on + strandat 4125.637 kb on + strandat 4125.637 kb on + strandat 4125.645 kb on - strandat 4125.645 kb on - strandat 4125.654 kb on + strandat 4125.657 kb on - strandat 4125.659 kb on + strandat 4125.659 kb on + strandat 4125.659 kb on + strandat 4125.659 kb on + strandat 4125.667 kb on - strandat 4125.737 kb on + strandat 4125.750 kb on - strand, within HP15_3895at 4125.794 kb on - strand, within HP15_3895at 4125.807 kb on - strand, within HP15_3895at 4125.969 kb on + strand, within HP15_3895at 4125.984 kb on + strand, within HP15_3895at 4126.023 kb on + strand, within HP15_3895at 4126.037 kb on - strand, within HP15_3895at 4126.054 kb on + strand, within HP15_3895at 4126.179 kb on + strand, within HP15_3895at 4126.189 kb on + strand, within HP15_3895at 4126.209 kb on - strand, within HP15_3895at 4126.306 kb on + strand, within HP15_3895at 4126.383 kb on - strand, within HP15_3895at 4126.411 kb on - strand, within HP15_3895at 4126.438 kb on - strand, within HP15_3895at 4126.565 kb on - strand, within HP15_3895at 4126.597 kb on + strandat 4126.608 kb on - strandat 4126.623 kb on + strandat 4126.653 kb on - strandat 4126.727 kb on - strandat 4126.727 kb on - strandat 4126.737 kb on - strandat 4126.746 kb on + strandat 4126.791 kb on + strandat 4126.792 kb on + strandat 4126.823 kb on + strandat 4126.831 kb on - strandat 4126.831 kb on - strandat 4126.833 kb on - strandat 4126.844 kb on + strandat 4126.854 kb on - strandat 4126.856 kb on + strandat 4126.881 kb on + strand, within HP15_3896at 4126.889 kb on - strand, within HP15_3896at 4126.922 kb on + strand, within HP15_3896at 4126.930 kb on - strand, within HP15_3896at 4126.931 kb on - strand, within HP15_3896at 4127.020 kb on - strand, within HP15_3896at 4127.032 kb on - strand, within HP15_3896at 4127.056 kb on + strand, within HP15_3896at 4127.211 kb on + strand, within HP15_3896at 4127.244 kb on + strand, within HP15_3896at 4127.249 kb on + strand, within HP15_3896at 4127.257 kb on - strand, within HP15_3896at 4127.295 kb on - strand, within HP15_3896at 4127.380 kb on + strand, within HP15_3896at 4127.385 kb on + strand, within HP15_3896at 4127.424 kb on + strand, within HP15_3896at 4127.502 kb on + strand, within HP15_3896at 4127.510 kb on - strand, within HP15_3896at 4127.593 kb on + strand, within HP15_3896at 4127.603 kb on + strand, within HP15_3896at 4127.611 kb on - strand, within HP15_3896at 4127.611 kb on - strand, within HP15_3896at 4127.617 kb on + strand, within HP15_3896at 4127.659 kb on + strand, within HP15_3896at 4127.701 kb on + strand, within HP15_3896at 4127.701 kb on + strand, within HP15_3896at 4127.701 kb on + strand, within HP15_3896

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
remove
4,124,739 + -1.8
4,124,810 + -1.0
4,125,041 - +0.8
4,125,049 + +0.5
4,125,094 - HP15_3894 0.15 -2.7
4,125,094 - HP15_3894 0.15 -2.1
4,125,176 + HP15_3894 0.29 +0.2
4,125,214 - HP15_3894 0.35 +0.9
4,125,261 - HP15_3894 0.42 +2.0
4,125,308 - HP15_3894 0.50 +0.1
4,125,320 + HP15_3894 0.52 -1.6
4,125,383 - HP15_3894 0.62 +0.1
4,125,477 + HP15_3894 0.77 -0.6
4,125,526 + HP15_3894 0.85 +0.2
4,125,576 + -0.2
4,125,610 + -1.2
4,125,610 + -0.0
4,125,637 + -1.7
4,125,637 + +2.2
4,125,637 + +1.3
4,125,645 - +1.1
4,125,645 - -0.9
4,125,654 + +2.8
4,125,657 - +0.3
4,125,659 + +0.3
4,125,659 + -0.0
4,125,659 + -1.2
4,125,659 + +0.4
4,125,667 - +0.2
4,125,737 + -1.4
4,125,750 - HP15_3895 0.11 -0.5
4,125,794 - HP15_3895 0.15 -2.4
4,125,807 - HP15_3895 0.16 +0.5
4,125,969 + HP15_3895 0.31 +0.1
4,125,984 + HP15_3895 0.33 -2.1
4,126,023 + HP15_3895 0.36 -0.6
4,126,037 - HP15_3895 0.38 -1.6
4,126,054 + HP15_3895 0.39 +1.1
4,126,179 + HP15_3895 0.51 +0.2
4,126,189 + HP15_3895 0.52 -0.5
4,126,209 - HP15_3895 0.54 -0.3
4,126,306 + HP15_3895 0.63 -1.9
4,126,383 - HP15_3895 0.70 +0.3
4,126,411 - HP15_3895 0.73 -1.5
4,126,438 - HP15_3895 0.75 +1.2
4,126,565 - HP15_3895 0.87 -2.5
4,126,597 + +0.5
4,126,608 - +0.2
4,126,623 + +0.6
4,126,653 - +0.1
4,126,727 - -2.9
4,126,727 - +0.6
4,126,737 - -0.1
4,126,746 + +1.1
4,126,791 + -1.2
4,126,792 + -0.3
4,126,823 + -2.9
4,126,831 - +1.1
4,126,831 - +0.8
4,126,833 - -3.3
4,126,844 + +0.2
4,126,854 - -0.2
4,126,856 + +0.2
4,126,881 + HP15_3896 0.11 -2.1
4,126,889 - HP15_3896 0.11 +1.3
4,126,922 + HP15_3896 0.14 -2.7
4,126,930 - HP15_3896 0.15 -3.2
4,126,931 - HP15_3896 0.15 -1.4
4,127,020 - HP15_3896 0.23 +1.9
4,127,032 - HP15_3896 0.24 +0.6
4,127,056 + HP15_3896 0.26 +1.0
4,127,211 + HP15_3896 0.40 -0.5
4,127,244 + HP15_3896 0.43 -1.2
4,127,249 + HP15_3896 0.44 +0.3
4,127,257 - HP15_3896 0.44 -0.8
4,127,295 - HP15_3896 0.48 +0.7
4,127,380 + HP15_3896 0.55 -0.4
4,127,385 + HP15_3896 0.56 +0.9
4,127,424 + HP15_3896 0.59 -0.1
4,127,502 + HP15_3896 0.66 -0.1
4,127,510 - HP15_3896 0.67 -0.4
4,127,593 + HP15_3896 0.74 +0.2
4,127,603 + HP15_3896 0.75 +0.9
4,127,611 - HP15_3896 0.76 +1.1
4,127,611 - HP15_3896 0.76 -1.8
4,127,617 + HP15_3896 0.76 +0.1
4,127,659 + HP15_3896 0.80 +1.6
4,127,701 + HP15_3896 0.84 +0.7
4,127,701 + HP15_3896 0.84 +0.9
4,127,701 + HP15_3896 0.84 -0.9

Or see this region's nucleotide sequence