Strain Fitness in Marinobacter adhaerens HP15 around HP15_3585

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3584 and HP15_3585 are separated by 110 nucleotidesHP15_3585 and HP15_3586 are separated by 10 nucleotides HP15_3584: HP15_3584 - transcriptional regulator, LysR family protein, at 3,775,095 to 3,776,042 _3584 HP15_3585: HP15_3585 - hypothetical protein, at 3,776,153 to 3,776,260 _3585 HP15_3586: HP15_3586 - membrane protein containing DUF6, transmembrane, at 3,776,271 to 3,777,221 _3586 Position (kb) 3776 3777Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3775.294 kb on - strand, within HP15_3584at 3775.442 kb on + strand, within HP15_3584at 3775.514 kb on + strand, within HP15_3584at 3775.542 kb on - strand, within HP15_3584at 3775.654 kb on - strand, within HP15_3584at 3775.657 kb on + strand, within HP15_3584at 3775.660 kb on - strand, within HP15_3584at 3775.744 kb on - strand, within HP15_3584at 3775.769 kb on - strand, within HP15_3584at 3775.810 kb on + strand, within HP15_3584at 3775.882 kb on - strand, within HP15_3584at 3775.912 kb on + strand, within HP15_3584at 3775.981 kb on - strandat 3776.183 kb on + strand, within HP15_3585at 3776.195 kb on - strand, within HP15_3585at 3776.249 kb on - strand, within HP15_3585at 3776.283 kb on + strandat 3776.482 kb on + strand, within HP15_3586at 3776.503 kb on - strand, within HP15_3586at 3776.516 kb on + strand, within HP15_3586at 3776.780 kb on + strand, within HP15_3586at 3776.926 kb on + strand, within HP15_3586at 3776.988 kb on + strand, within HP15_3586at 3776.988 kb on + strand, within HP15_3586at 3776.988 kb on + strand, within HP15_3586at 3776.996 kb on - strand, within HP15_3586at 3776.996 kb on - strand, within HP15_3586at 3777.093 kb on + strand, within HP15_3586at 3777.179 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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3,775,294 - HP15_3584 0.21 -1.2
3,775,442 + HP15_3584 0.37 -3.4
3,775,514 + HP15_3584 0.44 +1.9
3,775,542 - HP15_3584 0.47 +0.6
3,775,654 - HP15_3584 0.59 -0.3
3,775,657 + HP15_3584 0.59 -1.8
3,775,660 - HP15_3584 0.60 +0.1
3,775,744 - HP15_3584 0.68 -0.7
3,775,769 - HP15_3584 0.71 -1.9
3,775,810 + HP15_3584 0.75 -0.4
3,775,882 - HP15_3584 0.83 +0.9
3,775,912 + HP15_3584 0.86 +0.5
3,775,981 - +0.7
3,776,183 + HP15_3585 0.28 +0.3
3,776,195 - HP15_3585 0.39 +1.1
3,776,249 - HP15_3585 0.89 -2.3
3,776,283 + -1.1
3,776,482 + HP15_3586 0.22 +1.5
3,776,503 - HP15_3586 0.24 +1.4
3,776,516 + HP15_3586 0.26 -0.1
3,776,780 + HP15_3586 0.54 -2.5
3,776,926 + HP15_3586 0.69 +1.6
3,776,988 + HP15_3586 0.75 -0.2
3,776,988 + HP15_3586 0.75 -3.6
3,776,988 + HP15_3586 0.75 +1.1
3,776,996 - HP15_3586 0.76 +0.3
3,776,996 - HP15_3586 0.76 -1.1
3,777,093 + HP15_3586 0.86 +0.2
3,777,179 - +1.0

Or see this region's nucleotide sequence