Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3532 and HP15_3533 are separated by 97 nucleotides HP15_3533 and HP15_3534 are separated by 50 nucleotides HP15_3534 and HP15_3535 are separated by 185 nucleotides
HP15_3532: HP15_3532 - Metal-dependent phosphohydrolase, HD subdomain protein, at 3,718,347 to 3,719,519
_3532
HP15_3533: HP15_3533 - response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 3,719,617 to 3,721,842
_3533
HP15_3534: HP15_3534 - conserved hypothetical protein, membrane, at 3,721,893 to 3,722,204
_3534
HP15_3535: HP15_3535 - hypothetical protein, at 3,722,390 to 3,722,674
_3535
Position (kb)
3719
3720
3721
3722 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3718.677 kb on + strand, within HP15_3532 at 3718.685 kb on - strand, within HP15_3532 at 3718.741 kb on - strand, within HP15_3532 at 3718.757 kb on + strand, within HP15_3532 at 3718.797 kb on - strand, within HP15_3532 at 3719.044 kb on + strand, within HP15_3532 at 3719.052 kb on - strand, within HP15_3532 at 3719.052 kb on - strand, within HP15_3532 at 3719.069 kb on + strand, within HP15_3532 at 3719.091 kb on - strand, within HP15_3532 at 3719.140 kb on - strand, within HP15_3532 at 3719.198 kb on + strand, within HP15_3532 at 3719.214 kb on + strand, within HP15_3532 at 3719.323 kb on + strand, within HP15_3532 at 3719.464 kb on + strand at 3719.595 kb on + strand at 3719.595 kb on + strand at 3719.682 kb on + strand at 3719.695 kb on - strand at 3719.742 kb on + strand at 3719.745 kb on - strand at 3719.751 kb on + strand at 3719.811 kb on + strand at 3719.821 kb on + strand at 3719.829 kb on - strand at 3719.836 kb on + strand at 3719.844 kb on - strand, within HP15_3533 at 3719.907 kb on - strand, within HP15_3533 at 3719.930 kb on + strand, within HP15_3533 at 3719.938 kb on - strand, within HP15_3533 at 3719.966 kb on + strand, within HP15_3533 at 3719.980 kb on - strand, within HP15_3533 at 3720.039 kb on + strand, within HP15_3533 at 3720.041 kb on - strand, within HP15_3533 at 3720.072 kb on + strand, within HP15_3533 at 3720.093 kb on + strand, within HP15_3533 at 3720.148 kb on - strand, within HP15_3533 at 3720.247 kb on - strand, within HP15_3533 at 3720.247 kb on - strand, within HP15_3533 at 3720.247 kb on - strand, within HP15_3533 at 3720.297 kb on + strand, within HP15_3533 at 3720.313 kb on - strand, within HP15_3533 at 3720.342 kb on - strand, within HP15_3533 at 3720.361 kb on + strand, within HP15_3533 at 3720.361 kb on + strand, within HP15_3533 at 3720.361 kb on + strand, within HP15_3533 at 3720.369 kb on - strand, within HP15_3533 at 3720.369 kb on - strand, within HP15_3533 at 3720.369 kb on - strand, within HP15_3533 at 3720.369 kb on - strand, within HP15_3533 at 3720.511 kb on + strand, within HP15_3533 at 3720.590 kb on - strand, within HP15_3533 at 3720.630 kb on + strand, within HP15_3533 at 3720.630 kb on + strand, within HP15_3533 at 3720.638 kb on - strand, within HP15_3533 at 3720.692 kb on - strand, within HP15_3533 at 3720.720 kb on + strand, within HP15_3533 at 3720.728 kb on - strand, within HP15_3533 at 3720.759 kb on + strand, within HP15_3533 at 3720.759 kb on + strand, within HP15_3533 at 3720.772 kb on + strand, within HP15_3533 at 3720.811 kb on - strand, within HP15_3533 at 3720.845 kb on + strand, within HP15_3533 at 3720.855 kb on + strand, within HP15_3533 at 3720.873 kb on - strand, within HP15_3533 at 3720.916 kb on + strand, within HP15_3533 at 3720.943 kb on + strand, within HP15_3533 at 3720.972 kb on - strand, within HP15_3533 at 3720.979 kb on + strand, within HP15_3533 at 3721.005 kb on + strand, within HP15_3533 at 3721.005 kb on + strand, within HP15_3533 at 3721.056 kb on - strand, within HP15_3533 at 3721.088 kb on + strand, within HP15_3533 at 3721.150 kb on - strand, within HP15_3533 at 3721.163 kb on + strand, within HP15_3533 at 3721.193 kb on - strand, within HP15_3533 at 3721.305 kb on - strand, within HP15_3533 at 3721.309 kb on - strand, within HP15_3533 at 3721.415 kb on + strand, within HP15_3533 at 3721.415 kb on + strand, within HP15_3533 at 3721.423 kb on - strand, within HP15_3533 at 3721.500 kb on - strand, within HP15_3533 at 3721.577 kb on - strand, within HP15_3533 at 3721.617 kb on - strand, within HP15_3533 at 3721.685 kb on - strand at 3721.890 kb on - strand at 3722.163 kb on - strand, within HP15_3534 at 3722.320 kb on - strand at 3722.325 kb on + strand at 3722.325 kb on + strand at 3722.428 kb on + strand, within HP15_3535 at 3722.457 kb on + strand, within HP15_3535 at 3722.590 kb on + strand, within HP15_3535 at 3722.632 kb on - strand, within HP15_3535 at 3722.760 kb on - strand at 3722.768 kb on - strand at 3722.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 3,718,677 + HP15_3532 0.28 -1.5 3,718,685 - HP15_3532 0.29 +0.8 3,718,741 - HP15_3532 0.34 -0.3 3,718,757 + HP15_3532 0.35 -0.9 3,718,797 - HP15_3532 0.38 +0.6 3,719,044 + HP15_3532 0.59 -0.2 3,719,052 - HP15_3532 0.60 +0.3 3,719,052 - HP15_3532 0.60 +0.5 3,719,069 + HP15_3532 0.62 -0.6 3,719,091 - HP15_3532 0.63 +1.6 3,719,140 - HP15_3532 0.68 -0.5 3,719,198 + HP15_3532 0.73 -1.2 3,719,214 + HP15_3532 0.74 -2.4 3,719,323 + HP15_3532 0.83 +0.4 3,719,464 + -1.2 3,719,595 + +1.8 3,719,595 + -0.9 3,719,682 + +0.1 3,719,695 - +0.2 3,719,742 + +0.4 3,719,745 - -0.2 3,719,751 + +1.2 3,719,811 + -0.2 3,719,821 + -0.4 3,719,829 - +1.0 3,719,836 + +1.4 3,719,844 - HP15_3533 0.10 -0.2 3,719,907 - HP15_3533 0.13 -0.7 3,719,930 + HP15_3533 0.14 -1.1 3,719,938 - HP15_3533 0.14 +0.1 3,719,966 + HP15_3533 0.16 +1.5 3,719,980 - HP15_3533 0.16 -2.2 3,720,039 + HP15_3533 0.19 -2.0 3,720,041 - HP15_3533 0.19 +0.5 3,720,072 + HP15_3533 0.20 +0.4 3,720,093 + HP15_3533 0.21 -0.6 3,720,148 - HP15_3533 0.24 +1.4 3,720,247 - HP15_3533 0.28 +0.4 3,720,247 - HP15_3533 0.28 -1.8 3,720,247 - HP15_3533 0.28 -3.1 3,720,297 + HP15_3533 0.31 +1.6 3,720,313 - HP15_3533 0.31 +0.4 3,720,342 - HP15_3533 0.33 +0.3 3,720,361 + HP15_3533 0.33 -2.8 3,720,361 + HP15_3533 0.33 +0.0 3,720,361 + HP15_3533 0.33 +0.1 3,720,369 - HP15_3533 0.34 +1.4 3,720,369 - HP15_3533 0.34 -0.9 3,720,369 - HP15_3533 0.34 +0.6 3,720,369 - HP15_3533 0.34 -2.6 3,720,511 + HP15_3533 0.40 -0.6 3,720,590 - HP15_3533 0.44 +0.2 3,720,630 + HP15_3533 0.46 -1.4 3,720,630 + HP15_3533 0.46 +0.1 3,720,638 - HP15_3533 0.46 -1.8 3,720,692 - HP15_3533 0.48 +0.8 3,720,720 + HP15_3533 0.50 -1.8 3,720,728 - HP15_3533 0.50 -2.0 3,720,759 + HP15_3533 0.51 -2.0 3,720,759 + HP15_3533 0.51 -1.3 3,720,772 + HP15_3533 0.52 +0.6 3,720,811 - HP15_3533 0.54 -2.4 3,720,845 + HP15_3533 0.55 +0.0 3,720,855 + HP15_3533 0.56 -0.7 3,720,873 - HP15_3533 0.56 +0.2 3,720,916 + HP15_3533 0.58 +0.1 3,720,943 + HP15_3533 0.60 +1.2 3,720,972 - HP15_3533 0.61 +1.5 3,720,979 + HP15_3533 0.61 +1.8 3,721,005 + HP15_3533 0.62 +0.1 3,721,005 + HP15_3533 0.62 +0.1 3,721,056 - HP15_3533 0.65 +0.2 3,721,088 + HP15_3533 0.66 +0.1 3,721,150 - HP15_3533 0.69 +1.0 3,721,163 + HP15_3533 0.69 -2.4 3,721,193 - HP15_3533 0.71 +0.8 3,721,305 - HP15_3533 0.76 -1.0 3,721,309 - HP15_3533 0.76 -2.4 3,721,415 + HP15_3533 0.81 +0.6 3,721,415 + HP15_3533 0.81 +0.1 3,721,423 - HP15_3533 0.81 -0.7 3,721,500 - HP15_3533 0.85 -1.5 3,721,577 - HP15_3533 0.88 +0.4 3,721,617 - HP15_3533 0.90 -1.6 3,721,685 - +1.7 3,721,890 - -0.3 3,722,163 - HP15_3534 0.87 +1.7 3,722,320 - +0.2 3,722,325 + -0.8 3,722,325 + -0.0 3,722,428 + HP15_3535 0.13 +0.6 3,722,457 + HP15_3535 0.24 +1.7 3,722,590 + HP15_3535 0.70 -0.4 3,722,632 - HP15_3535 0.85 +0.7 3,722,760 - +0.7 3,722,768 - +0.6 3,722,828 - -0.6
Or see this region's nucleotide sequence