Strain Fitness in Marinobacter adhaerens HP15 around HP15_3533

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3532 and HP15_3533 are separated by 97 nucleotidesHP15_3533 and HP15_3534 are separated by 50 nucleotidesHP15_3534 and HP15_3535 are separated by 185 nucleotides HP15_3532: HP15_3532 - Metal-dependent phosphohydrolase, HD subdomain protein, at 3,718,347 to 3,719,519 _3532 HP15_3533: HP15_3533 - response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 3,719,617 to 3,721,842 _3533 HP15_3534: HP15_3534 - conserved hypothetical protein, membrane, at 3,721,893 to 3,722,204 _3534 HP15_3535: HP15_3535 - hypothetical protein, at 3,722,390 to 3,722,674 _3535 Position (kb) 3719 3720 3721 3722Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3718.677 kb on + strand, within HP15_3532at 3718.685 kb on - strand, within HP15_3532at 3718.741 kb on - strand, within HP15_3532at 3718.757 kb on + strand, within HP15_3532at 3718.797 kb on - strand, within HP15_3532at 3719.044 kb on + strand, within HP15_3532at 3719.052 kb on - strand, within HP15_3532at 3719.052 kb on - strand, within HP15_3532at 3719.069 kb on + strand, within HP15_3532at 3719.091 kb on - strand, within HP15_3532at 3719.140 kb on - strand, within HP15_3532at 3719.198 kb on + strand, within HP15_3532at 3719.214 kb on + strand, within HP15_3532at 3719.323 kb on + strand, within HP15_3532at 3719.464 kb on + strandat 3719.595 kb on + strandat 3719.595 kb on + strandat 3719.682 kb on + strandat 3719.695 kb on - strandat 3719.742 kb on + strandat 3719.745 kb on - strandat 3719.751 kb on + strandat 3719.811 kb on + strandat 3719.821 kb on + strandat 3719.829 kb on - strandat 3719.836 kb on + strandat 3719.844 kb on - strand, within HP15_3533at 3719.907 kb on - strand, within HP15_3533at 3719.930 kb on + strand, within HP15_3533at 3719.938 kb on - strand, within HP15_3533at 3719.966 kb on + strand, within HP15_3533at 3719.980 kb on - strand, within HP15_3533at 3720.039 kb on + strand, within HP15_3533at 3720.041 kb on - strand, within HP15_3533at 3720.072 kb on + strand, within HP15_3533at 3720.093 kb on + strand, within HP15_3533at 3720.148 kb on - strand, within HP15_3533at 3720.247 kb on - strand, within HP15_3533at 3720.247 kb on - strand, within HP15_3533at 3720.247 kb on - strand, within HP15_3533at 3720.297 kb on + strand, within HP15_3533at 3720.313 kb on - strand, within HP15_3533at 3720.342 kb on - strand, within HP15_3533at 3720.361 kb on + strand, within HP15_3533at 3720.361 kb on + strand, within HP15_3533at 3720.361 kb on + strand, within HP15_3533at 3720.369 kb on - strand, within HP15_3533at 3720.369 kb on - strand, within HP15_3533at 3720.369 kb on - strand, within HP15_3533at 3720.369 kb on - strand, within HP15_3533at 3720.511 kb on + strand, within HP15_3533at 3720.590 kb on - strand, within HP15_3533at 3720.630 kb on + strand, within HP15_3533at 3720.630 kb on + strand, within HP15_3533at 3720.638 kb on - strand, within HP15_3533at 3720.692 kb on - strand, within HP15_3533at 3720.720 kb on + strand, within HP15_3533at 3720.728 kb on - strand, within HP15_3533at 3720.759 kb on + strand, within HP15_3533at 3720.759 kb on + strand, within HP15_3533at 3720.772 kb on + strand, within HP15_3533at 3720.811 kb on - strand, within HP15_3533at 3720.845 kb on + strand, within HP15_3533at 3720.855 kb on + strand, within HP15_3533at 3720.873 kb on - strand, within HP15_3533at 3720.916 kb on + strand, within HP15_3533at 3720.943 kb on + strand, within HP15_3533at 3720.972 kb on - strand, within HP15_3533at 3720.979 kb on + strand, within HP15_3533at 3721.005 kb on + strand, within HP15_3533at 3721.005 kb on + strand, within HP15_3533at 3721.056 kb on - strand, within HP15_3533at 3721.088 kb on + strand, within HP15_3533at 3721.150 kb on - strand, within HP15_3533at 3721.163 kb on + strand, within HP15_3533at 3721.193 kb on - strand, within HP15_3533at 3721.305 kb on - strand, within HP15_3533at 3721.309 kb on - strand, within HP15_3533at 3721.415 kb on + strand, within HP15_3533at 3721.415 kb on + strand, within HP15_3533at 3721.423 kb on - strand, within HP15_3533at 3721.500 kb on - strand, within HP15_3533at 3721.577 kb on - strand, within HP15_3533at 3721.617 kb on - strand, within HP15_3533at 3721.685 kb on - strandat 3721.890 kb on - strandat 3722.163 kb on - strand, within HP15_3534at 3722.320 kb on - strandat 3722.325 kb on + strandat 3722.325 kb on + strandat 3722.428 kb on + strand, within HP15_3535at 3722.457 kb on + strand, within HP15_3535at 3722.590 kb on + strand, within HP15_3535at 3722.632 kb on - strand, within HP15_3535at 3722.760 kb on - strandat 3722.768 kb on - strandat 3722.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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3,718,677 + HP15_3532 0.28 -1.5
3,718,685 - HP15_3532 0.29 +0.8
3,718,741 - HP15_3532 0.34 -0.3
3,718,757 + HP15_3532 0.35 -0.9
3,718,797 - HP15_3532 0.38 +0.6
3,719,044 + HP15_3532 0.59 -0.2
3,719,052 - HP15_3532 0.60 +0.3
3,719,052 - HP15_3532 0.60 +0.5
3,719,069 + HP15_3532 0.62 -0.6
3,719,091 - HP15_3532 0.63 +1.6
3,719,140 - HP15_3532 0.68 -0.5
3,719,198 + HP15_3532 0.73 -1.2
3,719,214 + HP15_3532 0.74 -2.4
3,719,323 + HP15_3532 0.83 +0.4
3,719,464 + -1.2
3,719,595 + +1.8
3,719,595 + -0.9
3,719,682 + +0.1
3,719,695 - +0.2
3,719,742 + +0.4
3,719,745 - -0.2
3,719,751 + +1.2
3,719,811 + -0.2
3,719,821 + -0.4
3,719,829 - +1.0
3,719,836 + +1.4
3,719,844 - HP15_3533 0.10 -0.2
3,719,907 - HP15_3533 0.13 -0.7
3,719,930 + HP15_3533 0.14 -1.1
3,719,938 - HP15_3533 0.14 +0.1
3,719,966 + HP15_3533 0.16 +1.5
3,719,980 - HP15_3533 0.16 -2.2
3,720,039 + HP15_3533 0.19 -2.0
3,720,041 - HP15_3533 0.19 +0.5
3,720,072 + HP15_3533 0.20 +0.4
3,720,093 + HP15_3533 0.21 -0.6
3,720,148 - HP15_3533 0.24 +1.4
3,720,247 - HP15_3533 0.28 +0.4
3,720,247 - HP15_3533 0.28 -1.8
3,720,247 - HP15_3533 0.28 -3.1
3,720,297 + HP15_3533 0.31 +1.6
3,720,313 - HP15_3533 0.31 +0.4
3,720,342 - HP15_3533 0.33 +0.3
3,720,361 + HP15_3533 0.33 -2.8
3,720,361 + HP15_3533 0.33 +0.0
3,720,361 + HP15_3533 0.33 +0.1
3,720,369 - HP15_3533 0.34 +1.4
3,720,369 - HP15_3533 0.34 -0.9
3,720,369 - HP15_3533 0.34 +0.6
3,720,369 - HP15_3533 0.34 -2.6
3,720,511 + HP15_3533 0.40 -0.6
3,720,590 - HP15_3533 0.44 +0.2
3,720,630 + HP15_3533 0.46 -1.4
3,720,630 + HP15_3533 0.46 +0.1
3,720,638 - HP15_3533 0.46 -1.8
3,720,692 - HP15_3533 0.48 +0.8
3,720,720 + HP15_3533 0.50 -1.8
3,720,728 - HP15_3533 0.50 -2.0
3,720,759 + HP15_3533 0.51 -2.0
3,720,759 + HP15_3533 0.51 -1.3
3,720,772 + HP15_3533 0.52 +0.6
3,720,811 - HP15_3533 0.54 -2.4
3,720,845 + HP15_3533 0.55 +0.0
3,720,855 + HP15_3533 0.56 -0.7
3,720,873 - HP15_3533 0.56 +0.2
3,720,916 + HP15_3533 0.58 +0.1
3,720,943 + HP15_3533 0.60 +1.2
3,720,972 - HP15_3533 0.61 +1.5
3,720,979 + HP15_3533 0.61 +1.8
3,721,005 + HP15_3533 0.62 +0.1
3,721,005 + HP15_3533 0.62 +0.1
3,721,056 - HP15_3533 0.65 +0.2
3,721,088 + HP15_3533 0.66 +0.1
3,721,150 - HP15_3533 0.69 +1.0
3,721,163 + HP15_3533 0.69 -2.4
3,721,193 - HP15_3533 0.71 +0.8
3,721,305 - HP15_3533 0.76 -1.0
3,721,309 - HP15_3533 0.76 -2.4
3,721,415 + HP15_3533 0.81 +0.6
3,721,415 + HP15_3533 0.81 +0.1
3,721,423 - HP15_3533 0.81 -0.7
3,721,500 - HP15_3533 0.85 -1.5
3,721,577 - HP15_3533 0.88 +0.4
3,721,617 - HP15_3533 0.90 -1.6
3,721,685 - +1.7
3,721,890 - -0.3
3,722,163 - HP15_3534 0.87 +1.7
3,722,320 - +0.2
3,722,325 + -0.8
3,722,325 + -0.0
3,722,428 + HP15_3535 0.13 +0.6
3,722,457 + HP15_3535 0.24 +1.7
3,722,590 + HP15_3535 0.70 -0.4
3,722,632 - HP15_3535 0.85 +0.7
3,722,760 - +0.7
3,722,768 - +0.6
3,722,828 - -0.6

Or see this region's nucleotide sequence