Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3381 and HP15_3382 are separated by 170 nucleotides HP15_3382 and HP15_3383 are separated by 82 nucleotides HP15_3383 and HP15_3384 are separated by 41 nucleotides HP15_3384 and HP15_3385 are separated by 152 nucleotides
HP15_3381: HP15_3381 - MscS mechanosensitive ion channel, at 3,549,918 to 3,550,751
_3381
HP15_3382: HP15_3382 - YbaK/prolyl-tRNA synthetase associated region, at 3,550,922 to 3,551,479
_3382
HP15_3383: HP15_3383 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 3,551,562 to 3,552,857
_3383
HP15_3384: HP15_3384 - HIT (histidine triad) family protein, at 3,552,899 to 3,553,264
_3384
HP15_3385: HP15_3385 - phosphate uptake regulator, PhoU, at 3,553,417 to 3,554,154
_3385
Position (kb)
3551
3552
3553 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3550.574 kb on - strand, within HP15_3381 at 3550.744 kb on - strand at 3550.806 kb on - strand at 3550.806 kb on - strand at 3550.807 kb on + strand at 3550.981 kb on + strand, within HP15_3382 at 3550.988 kb on - strand, within HP15_3382 at 3551.226 kb on + strand, within HP15_3382 at 3551.430 kb on + strand at 3551.433 kb on - strand at 3551.438 kb on - strand at 3551.455 kb on + strand at 3551.542 kb on + strand at 3552.801 kb on - strand at 3552.849 kb on - strand at 3552.979 kb on - strand, within HP15_3384 at 3552.980 kb on - strand, within HP15_3384 at 3553.086 kb on - strand, within HP15_3384 at 3553.151 kb on + strand, within HP15_3384 at 3553.220 kb on + strand, within HP15_3384 at 3553.220 kb on + strand, within HP15_3384 at 3553.228 kb on - strand at 3553.228 kb on - strand at 3553.278 kb on + strand at 3553.320 kb on + strand at 3553.361 kb on - strand at 3553.398 kb on + strand at 3553.410 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 3,550,574 - HP15_3381 0.79 +1.2 3,550,744 - -2.7 3,550,806 - -0.5 3,550,806 - +2.7 3,550,807 + +1.4 3,550,981 + HP15_3382 0.11 +0.9 3,550,988 - HP15_3382 0.12 +1.0 3,551,226 + HP15_3382 0.54 -1.8 3,551,430 + -0.2 3,551,433 - -1.7 3,551,438 - -0.3 3,551,455 + -0.3 3,551,542 + +1.1 3,552,801 - -2.3 3,552,849 - +1.4 3,552,979 - HP15_3384 0.22 +1.5 3,552,980 - HP15_3384 0.22 +0.7 3,553,086 - HP15_3384 0.51 +0.5 3,553,151 + HP15_3384 0.69 +0.0 3,553,220 + HP15_3384 0.88 +0.6 3,553,220 + HP15_3384 0.88 -1.0 3,553,228 - -1.6 3,553,228 - -2.5 3,553,278 + +0.6 3,553,320 + +0.5 3,553,361 - -3.0 3,553,398 + -0.0 3,553,410 + -3.8
Or see this region's nucleotide sequence