Strain Fitness in Marinobacter adhaerens HP15 around HP15_3128

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3125 and HP15_3126 are separated by 58 nucleotidesHP15_3126 and HP15_3127 are separated by 33 nucleotidesHP15_3127 and HP15_3128 are separated by 11 nucleotidesHP15_3128 and HP15_3129 are separated by 112 nucleotides HP15_3125: HP15_3125 - sulfite oxidase protein, at 3,278,346 to 3,279,572 _3125 HP15_3126: HP15_3126 - cytochrome c protein, at 3,279,631 to 3,279,951 _3126 HP15_3127: HP15_3127 - methionine sulfoxide reductase B, at 3,279,985 to 3,280,410 _3127 HP15_3128: HP15_3128 - methionine sulfoxide reductase A, at 3,280,422 to 3,281,075 _3128 HP15_3129: HP15_3129 - chromate transporter, at 3,281,188 to 3,282,369 _3129 Position (kb) 3280 3281 3282Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3279.493 kb on - strandat 3279.612 kb on - strandat 3279.646 kb on + strandat 3279.654 kb on - strandat 3279.725 kb on - strand, within HP15_3126at 3279.738 kb on + strand, within HP15_3126at 3279.755 kb on + strand, within HP15_3126at 3279.755 kb on + strand, within HP15_3126at 3279.763 kb on - strand, within HP15_3126at 3279.834 kb on + strand, within HP15_3126at 3279.862 kb on - strand, within HP15_3126at 3280.025 kb on - strandat 3280.058 kb on + strand, within HP15_3127at 3280.216 kb on + strand, within HP15_3127at 3280.522 kb on + strand, within HP15_3128at 3280.603 kb on - strand, within HP15_3128at 3280.715 kb on - strand, within HP15_3128at 3280.715 kb on - strand, within HP15_3128at 3280.725 kb on - strand, within HP15_3128at 3280.762 kb on + strand, within HP15_3128at 3280.809 kb on + strand, within HP15_3128at 3280.815 kb on - strand, within HP15_3128at 3280.971 kb on - strand, within HP15_3128at 3280.993 kb on - strand, within HP15_3128at 3281.015 kb on - strandat 3281.089 kb on - strandat 3281.101 kb on + strandat 3281.154 kb on - strandat 3281.382 kb on + strand, within HP15_3129at 3281.486 kb on + strand, within HP15_3129at 3281.551 kb on + strand, within HP15_3129at 3281.554 kb on - strand, within HP15_3129at 3281.564 kb on - strand, within HP15_3129at 3281.571 kb on - strand, within HP15_3129at 3281.620 kb on - strand, within HP15_3129at 3281.627 kb on - strand, within HP15_3129at 3281.627 kb on - strand, within HP15_3129at 3281.682 kb on - strand, within HP15_3129at 3281.719 kb on - strand, within HP15_3129at 3281.794 kb on - strand, within HP15_3129at 3281.836 kb on + strand, within HP15_3129at 3281.892 kb on + strand, within HP15_3129at 3281.949 kb on + strand, within HP15_3129at 3282.057 kb on + strand, within HP15_3129at 3282.057 kb on + strand, within HP15_3129at 3282.065 kb on - strand, within HP15_3129

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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3,279,493 - +0.6
3,279,612 - -0.4
3,279,646 + -1.5
3,279,654 - +0.3
3,279,725 - HP15_3126 0.29 -1.1
3,279,738 + HP15_3126 0.33 -1.2
3,279,755 + HP15_3126 0.39 +0.5
3,279,755 + HP15_3126 0.39 -0.2
3,279,763 - HP15_3126 0.41 +0.3
3,279,834 + HP15_3126 0.63 -0.4
3,279,862 - HP15_3126 0.72 -2.8
3,280,025 - +1.3
3,280,058 + HP15_3127 0.17 -1.8
3,280,216 + HP15_3127 0.54 +0.1
3,280,522 + HP15_3128 0.15 -0.2
3,280,603 - HP15_3128 0.28 +0.1
3,280,715 - HP15_3128 0.45 +2.9
3,280,715 - HP15_3128 0.45 +0.2
3,280,725 - HP15_3128 0.46 +0.2
3,280,762 + HP15_3128 0.52 +0.1
3,280,809 + HP15_3128 0.59 -3.4
3,280,815 - HP15_3128 0.60 -1.4
3,280,971 - HP15_3128 0.84 +2.7
3,280,993 - HP15_3128 0.87 +0.4
3,281,015 - -1.2
3,281,089 - +2.5
3,281,101 + -0.5
3,281,154 - -1.0
3,281,382 + HP15_3129 0.16 +0.2
3,281,486 + HP15_3129 0.25 -0.2
3,281,551 + HP15_3129 0.31 +3.1
3,281,554 - HP15_3129 0.31 +0.7
3,281,564 - HP15_3129 0.32 -1.2
3,281,571 - HP15_3129 0.32 -0.6
3,281,620 - HP15_3129 0.37 +0.9
3,281,627 - HP15_3129 0.37 -0.7
3,281,627 - HP15_3129 0.37 +1.0
3,281,682 - HP15_3129 0.42 +0.4
3,281,719 - HP15_3129 0.45 -2.4
3,281,794 - HP15_3129 0.51 +2.6
3,281,836 + HP15_3129 0.55 +0.5
3,281,892 + HP15_3129 0.60 -0.6
3,281,949 + HP15_3129 0.64 -1.5
3,282,057 + HP15_3129 0.74 -2.1
3,282,057 + HP15_3129 0.74 +0.9
3,282,065 - HP15_3129 0.74 +1.4

Or see this region's nucleotide sequence