Strain Fitness in Marinobacter adhaerens HP15 around HP15_3020

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3019 and HP15_3020 are separated by 3 nucleotidesHP15_3020 and HP15_3021 are separated by 12 nucleotidesHP15_3021 and HP15_3022 are separated by 128 nucleotides HP15_3019: HP15_3019 - Na+/Ca+ antiporter, CaCA family, at 3,163,652 to 3,164,623 _3019 HP15_3020: HP15_3020 - lysine exporter protein (LYSE/YGGA), at 3,164,627 to 3,165,247 _3020 HP15_3021: HP15_3021 - glycolate oxidase iron-sulfur subunit, at 3,165,260 to 3,165,691 _3021 HP15_3022: HP15_3022 - protein of unknown function cysteine-rich region domain protein, at 3,165,820 to 3,167,028 _3022 Position (kb) 3164 3165 3166Strain fitness (log2 ratio) -2 -1 0 1 2at 3163.713 kb on - strandat 3163.805 kb on - strand, within HP15_3019at 3163.835 kb on - strand, within HP15_3019at 3163.865 kb on + strand, within HP15_3019at 3163.878 kb on - strand, within HP15_3019at 3163.951 kb on + strand, within HP15_3019at 3163.998 kb on - strand, within HP15_3019at 3164.010 kb on + strand, within HP15_3019at 3164.227 kb on + strand, within HP15_3019at 3164.246 kb on - strand, within HP15_3019at 3164.312 kb on + strand, within HP15_3019at 3164.393 kb on - strand, within HP15_3019at 3164.403 kb on - strand, within HP15_3019at 3164.403 kb on - strand, within HP15_3019at 3164.459 kb on + strand, within HP15_3019at 3164.474 kb on - strand, within HP15_3019at 3164.578 kb on - strandat 3164.688 kb on - strandat 3164.696 kb on - strand, within HP15_3020at 3165.000 kb on - strand, within HP15_3020at 3165.000 kb on - strand, within HP15_3020at 3165.059 kb on - strand, within HP15_3020at 3165.064 kb on + strand, within HP15_3020at 3165.251 kb on - strandat 3165.294 kb on - strandat 3165.398 kb on + strand, within HP15_3021at 3165.414 kb on + strand, within HP15_3021at 3165.422 kb on - strand, within HP15_3021at 3165.422 kb on - strand, within HP15_3021at 3165.438 kb on + strand, within HP15_3021at 3165.659 kb on - strandat 3165.697 kb on + strandat 3165.704 kb on + strandat 3165.712 kb on - strandat 3165.712 kb on - strandat 3165.834 kb on + strandat 3166.076 kb on - strand, within HP15_3022at 3166.146 kb on - strand, within HP15_3022at 3166.196 kb on - strand, within HP15_3022

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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3,163,713 - +2.1
3,163,805 - HP15_3019 0.16 +1.5
3,163,835 - HP15_3019 0.19 -0.5
3,163,865 + HP15_3019 0.22 +0.2
3,163,878 - HP15_3019 0.23 +1.8
3,163,951 + HP15_3019 0.31 +0.4
3,163,998 - HP15_3019 0.36 +0.5
3,164,010 + HP15_3019 0.37 +0.9
3,164,227 + HP15_3019 0.59 +0.4
3,164,246 - HP15_3019 0.61 +0.7
3,164,312 + HP15_3019 0.68 +0.8
3,164,393 - HP15_3019 0.76 -0.7
3,164,403 - HP15_3019 0.77 -0.2
3,164,403 - HP15_3019 0.77 +0.2
3,164,459 + HP15_3019 0.83 +1.0
3,164,474 - HP15_3019 0.85 +1.4
3,164,578 - -1.2
3,164,688 - -0.7
3,164,696 - HP15_3020 0.11 -0.5
3,165,000 - HP15_3020 0.60 +0.3
3,165,000 - HP15_3020 0.60 +1.7
3,165,059 - HP15_3020 0.70 -0.5
3,165,064 + HP15_3020 0.70 +1.1
3,165,251 - -0.2
3,165,294 - -1.7
3,165,398 + HP15_3021 0.32 -1.1
3,165,414 + HP15_3021 0.36 -2.4
3,165,422 - HP15_3021 0.38 -1.2
3,165,422 - HP15_3021 0.38 -0.9
3,165,438 + HP15_3021 0.41 +1.3
3,165,659 - -0.0
3,165,697 + -1.2
3,165,704 + +1.3
3,165,712 - +0.8
3,165,712 - -0.1
3,165,834 + +1.3
3,166,076 - HP15_3022 0.21 +0.7
3,166,146 - HP15_3022 0.27 -1.6
3,166,196 - HP15_3022 0.31 +0.2

Or see this region's nucleotide sequence