Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2925 and HP15_2926 are separated by 29 nucleotides HP15_2926 and HP15_2927 are separated by 119 nucleotides
HP15_2925: HP15_2925 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,063,695 to 3,065,047
_2925
HP15_2926: HP15_2926 - ribosomal RNA small subunit methyltransferase E, at 3,065,077 to 3,065,811
_2926
HP15_2927: HP15_2927 - conserved hypothetical protein, membrane, at 3,065,931 to 3,067,160
_2927
Position (kb)
3065
3066 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3064.119 kb on + strand, within HP15_2925 at 3064.146 kb on + strand, within HP15_2925 at 3064.186 kb on + strand, within HP15_2925 at 3064.407 kb on + strand, within HP15_2925 at 3064.440 kb on + strand, within HP15_2925 at 3064.500 kb on + strand, within HP15_2925 at 3064.547 kb on + strand, within HP15_2925 at 3064.548 kb on - strand, within HP15_2925 at 3064.588 kb on - strand, within HP15_2925 at 3064.590 kb on + strand, within HP15_2925 at 3064.637 kb on - strand, within HP15_2925 at 3064.670 kb on + strand, within HP15_2925 at 3064.708 kb on - strand, within HP15_2925 at 3064.734 kb on - strand, within HP15_2925 at 3064.745 kb on + strand, within HP15_2925 at 3064.789 kb on + strand, within HP15_2925 at 3064.803 kb on - strand, within HP15_2925 at 3064.875 kb on + strand, within HP15_2925 at 3064.950 kb on - strand at 3065.021 kb on + strand at 3065.022 kb on + strand at 3065.029 kb on - strand at 3065.029 kb on - strand at 3065.088 kb on - strand at 3065.094 kb on - strand at 3065.118 kb on + strand at 3065.118 kb on + strand at 3065.137 kb on + strand at 3065.193 kb on - strand, within HP15_2926 at 3065.279 kb on - strand, within HP15_2926 at 3065.330 kb on - strand, within HP15_2926 at 3065.337 kb on - strand, within HP15_2926 at 3065.352 kb on + strand, within HP15_2926 at 3065.396 kb on - strand, within HP15_2926 at 3065.430 kb on + strand, within HP15_2926 at 3065.497 kb on - strand, within HP15_2926 at 3065.560 kb on - strand, within HP15_2926 at 3065.877 kb on + strand at 3065.886 kb on - strand at 3066.035 kb on + strand at 3066.146 kb on + strand, within HP15_2927 at 3066.154 kb on - strand, within HP15_2927 at 3066.199 kb on + strand, within HP15_2927 at 3066.472 kb on - strand, within HP15_2927 at 3066.506 kb on - strand, within HP15_2927 at 3066.523 kb on + strand, within HP15_2927 at 3066.583 kb on + strand, within HP15_2927 at 3066.779 kb on + strand, within HP15_2927 at 3066.779 kb on + strand, within HP15_2927 at 3066.779 kb on + strand, within HP15_2927 at 3066.787 kb on - strand, within HP15_2927 at 3066.787 kb on - strand, within HP15_2927 at 3066.787 kb on - strand, within HP15_2927
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 3,064,119 + HP15_2925 0.31 -1.0 3,064,146 + HP15_2925 0.33 -0.1 3,064,186 + HP15_2925 0.36 -1.8 3,064,407 + HP15_2925 0.53 -0.0 3,064,440 + HP15_2925 0.55 +0.4 3,064,500 + HP15_2925 0.59 -1.1 3,064,547 + HP15_2925 0.63 +1.7 3,064,548 - HP15_2925 0.63 -0.2 3,064,588 - HP15_2925 0.66 +0.3 3,064,590 + HP15_2925 0.66 +0.9 3,064,637 - HP15_2925 0.70 -0.0 3,064,670 + HP15_2925 0.72 +0.9 3,064,708 - HP15_2925 0.75 -2.0 3,064,734 - HP15_2925 0.77 -0.5 3,064,745 + HP15_2925 0.78 +1.5 3,064,789 + HP15_2925 0.81 -1.7 3,064,803 - HP15_2925 0.82 -0.3 3,064,875 + HP15_2925 0.87 +0.6 3,064,950 - +1.3 3,065,021 + -1.8 3,065,022 + +0.4 3,065,029 - -1.4 3,065,029 - -1.3 3,065,088 - -0.4 3,065,094 - +0.8 3,065,118 + -1.0 3,065,118 + -0.5 3,065,137 + +2.0 3,065,193 - HP15_2926 0.16 -0.8 3,065,279 - HP15_2926 0.27 -2.0 3,065,330 - HP15_2926 0.34 -1.7 3,065,337 - HP15_2926 0.35 -0.6 3,065,352 + HP15_2926 0.37 -4.2 3,065,396 - HP15_2926 0.43 -1.2 3,065,430 + HP15_2926 0.48 -0.4 3,065,497 - HP15_2926 0.57 -0.3 3,065,560 - HP15_2926 0.66 -0.4 3,065,877 + -0.9 3,065,886 - +0.6 3,066,035 + -3.3 3,066,146 + HP15_2927 0.17 -0.0 3,066,154 - HP15_2927 0.18 +0.0 3,066,199 + HP15_2927 0.22 -0.8 3,066,472 - HP15_2927 0.44 +0.6 3,066,506 - HP15_2927 0.47 -1.1 3,066,523 + HP15_2927 0.48 +0.3 3,066,583 + HP15_2927 0.53 +0.5 3,066,779 + HP15_2927 0.69 +1.3 3,066,779 + HP15_2927 0.69 +0.1 3,066,779 + HP15_2927 0.69 +2.2 3,066,787 - HP15_2927 0.70 -1.3 3,066,787 - HP15_2927 0.70 +1.5 3,066,787 - HP15_2927 0.70 -1.1
Or see this region's nucleotide sequence