Strain Fitness in Marinobacter adhaerens HP15 around HP15_2926

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2925 and HP15_2926 are separated by 29 nucleotidesHP15_2926 and HP15_2927 are separated by 119 nucleotides HP15_2925: HP15_2925 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,063,695 to 3,065,047 _2925 HP15_2926: HP15_2926 - ribosomal RNA small subunit methyltransferase E, at 3,065,077 to 3,065,811 _2926 HP15_2927: HP15_2927 - conserved hypothetical protein, membrane, at 3,065,931 to 3,067,160 _2927 Position (kb) 3065 3066Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3064.119 kb on + strand, within HP15_2925at 3064.146 kb on + strand, within HP15_2925at 3064.186 kb on + strand, within HP15_2925at 3064.407 kb on + strand, within HP15_2925at 3064.440 kb on + strand, within HP15_2925at 3064.500 kb on + strand, within HP15_2925at 3064.547 kb on + strand, within HP15_2925at 3064.548 kb on - strand, within HP15_2925at 3064.588 kb on - strand, within HP15_2925at 3064.590 kb on + strand, within HP15_2925at 3064.637 kb on - strand, within HP15_2925at 3064.670 kb on + strand, within HP15_2925at 3064.708 kb on - strand, within HP15_2925at 3064.734 kb on - strand, within HP15_2925at 3064.745 kb on + strand, within HP15_2925at 3064.789 kb on + strand, within HP15_2925at 3064.803 kb on - strand, within HP15_2925at 3064.875 kb on + strand, within HP15_2925at 3064.950 kb on - strandat 3065.021 kb on + strandat 3065.022 kb on + strandat 3065.029 kb on - strandat 3065.029 kb on - strandat 3065.088 kb on - strandat 3065.094 kb on - strandat 3065.118 kb on + strandat 3065.118 kb on + strandat 3065.137 kb on + strandat 3065.193 kb on - strand, within HP15_2926at 3065.279 kb on - strand, within HP15_2926at 3065.330 kb on - strand, within HP15_2926at 3065.337 kb on - strand, within HP15_2926at 3065.352 kb on + strand, within HP15_2926at 3065.396 kb on - strand, within HP15_2926at 3065.430 kb on + strand, within HP15_2926at 3065.497 kb on - strand, within HP15_2926at 3065.560 kb on - strand, within HP15_2926at 3065.877 kb on + strandat 3065.886 kb on - strandat 3066.035 kb on + strandat 3066.146 kb on + strand, within HP15_2927at 3066.154 kb on - strand, within HP15_2927at 3066.199 kb on + strand, within HP15_2927at 3066.472 kb on - strand, within HP15_2927at 3066.506 kb on - strand, within HP15_2927at 3066.523 kb on + strand, within HP15_2927at 3066.583 kb on + strand, within HP15_2927at 3066.779 kb on + strand, within HP15_2927at 3066.779 kb on + strand, within HP15_2927at 3066.779 kb on + strand, within HP15_2927at 3066.787 kb on - strand, within HP15_2927at 3066.787 kb on - strand, within HP15_2927at 3066.787 kb on - strand, within HP15_2927

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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3,064,119 + HP15_2925 0.31 -1.0
3,064,146 + HP15_2925 0.33 -0.1
3,064,186 + HP15_2925 0.36 -1.8
3,064,407 + HP15_2925 0.53 -0.0
3,064,440 + HP15_2925 0.55 +0.4
3,064,500 + HP15_2925 0.59 -1.1
3,064,547 + HP15_2925 0.63 +1.7
3,064,548 - HP15_2925 0.63 -0.2
3,064,588 - HP15_2925 0.66 +0.3
3,064,590 + HP15_2925 0.66 +0.9
3,064,637 - HP15_2925 0.70 -0.0
3,064,670 + HP15_2925 0.72 +0.9
3,064,708 - HP15_2925 0.75 -2.0
3,064,734 - HP15_2925 0.77 -0.5
3,064,745 + HP15_2925 0.78 +1.5
3,064,789 + HP15_2925 0.81 -1.7
3,064,803 - HP15_2925 0.82 -0.3
3,064,875 + HP15_2925 0.87 +0.6
3,064,950 - +1.3
3,065,021 + -1.8
3,065,022 + +0.4
3,065,029 - -1.4
3,065,029 - -1.3
3,065,088 - -0.4
3,065,094 - +0.8
3,065,118 + -1.0
3,065,118 + -0.5
3,065,137 + +2.0
3,065,193 - HP15_2926 0.16 -0.8
3,065,279 - HP15_2926 0.27 -2.0
3,065,330 - HP15_2926 0.34 -1.7
3,065,337 - HP15_2926 0.35 -0.6
3,065,352 + HP15_2926 0.37 -4.2
3,065,396 - HP15_2926 0.43 -1.2
3,065,430 + HP15_2926 0.48 -0.4
3,065,497 - HP15_2926 0.57 -0.3
3,065,560 - HP15_2926 0.66 -0.4
3,065,877 + -0.9
3,065,886 - +0.6
3,066,035 + -3.3
3,066,146 + HP15_2927 0.17 -0.0
3,066,154 - HP15_2927 0.18 +0.0
3,066,199 + HP15_2927 0.22 -0.8
3,066,472 - HP15_2927 0.44 +0.6
3,066,506 - HP15_2927 0.47 -1.1
3,066,523 + HP15_2927 0.48 +0.3
3,066,583 + HP15_2927 0.53 +0.5
3,066,779 + HP15_2927 0.69 +1.3
3,066,779 + HP15_2927 0.69 +0.1
3,066,779 + HP15_2927 0.69 +2.2
3,066,787 - HP15_2927 0.70 -1.3
3,066,787 - HP15_2927 0.70 +1.5
3,066,787 - HP15_2927 0.70 -1.1

Or see this region's nucleotide sequence