Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2737 and HP15_2738 are separated by 10 nucleotides HP15_2738 and HP15_2739 are separated by 13 nucleotides HP15_2739 and HP15_2740 are separated by 471 nucleotides
HP15_2737: HP15_2737 - Coq7 family protein, at 2,890,225 to 2,890,803
_2737
HP15_2738: HP15_2738 - hypothetical protein, at 2,890,814 to 2,891,332
_2738
HP15_2739: HP15_2739 - DNA-3-methyladenine glycosidase II, at 2,891,346 to 2,891,975
_2739
HP15_2740: HP15_2740 - membrane protein containing DUF6, transmembrane, at 2,892,447 to 2,893,343
_2740
Position (kb)
2891
2892 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2890.436 kb on + strand, within HP15_2737 at 2890.444 kb on - strand, within HP15_2737 at 2890.444 kb on - strand, within HP15_2737 at 2890.562 kb on - strand, within HP15_2737 at 2890.597 kb on - strand, within HP15_2737 at 2890.662 kb on - strand, within HP15_2737 at 2890.664 kb on - strand, within HP15_2737 at 2890.731 kb on + strand, within HP15_2737 at 2890.943 kb on + strand, within HP15_2738 at 2890.943 kb on + strand, within HP15_2738 at 2891.059 kb on - strand, within HP15_2738 at 2891.116 kb on - strand, within HP15_2738 at 2891.145 kb on - strand, within HP15_2738 at 2891.145 kb on - strand, within HP15_2738 at 2891.177 kb on - strand, within HP15_2738 at 2891.218 kb on - strand, within HP15_2738 at 2891.234 kb on + strand, within HP15_2738 at 2891.234 kb on + strand, within HP15_2738 at 2891.234 kb on + strand, within HP15_2738 at 2891.407 kb on - strand at 2891.620 kb on + strand, within HP15_2739 at 2891.687 kb on - strand, within HP15_2739 at 2891.756 kb on + strand, within HP15_2739 at 2891.787 kb on + strand, within HP15_2739 at 2891.787 kb on + strand, within HP15_2739 at 2891.812 kb on - strand, within HP15_2739 at 2891.911 kb on - strand, within HP15_2739 at 2891.970 kb on - strand at 2892.023 kb on + strand at 2892.041 kb on - strand at 2892.085 kb on + strand at 2892.136 kb on + strand at 2892.144 kb on - strand at 2892.156 kb on + strand at 2892.225 kb on - strand at 2892.237 kb on - strand at 2892.237 kb on - strand at 2892.270 kb on + strand at 2892.307 kb on - strand at 2892.317 kb on - strand at 2892.425 kb on - strand at 2892.442 kb on - strand at 2892.614 kb on + strand, within HP15_2740 at 2892.726 kb on - strand, within HP15_2740 at 2892.766 kb on + strand, within HP15_2740 at 2892.786 kb on + strand, within HP15_2740 at 2892.817 kb on - strand, within HP15_2740 at 2892.926 kb on - strand, within HP15_2740
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 2,890,436 + HP15_2737 0.36 -1.3 2,890,444 - HP15_2737 0.38 +0.9 2,890,444 - HP15_2737 0.38 +2.0 2,890,562 - HP15_2737 0.58 +0.7 2,890,597 - HP15_2737 0.64 +0.7 2,890,662 - HP15_2737 0.75 -1.3 2,890,664 - HP15_2737 0.76 -0.1 2,890,731 + HP15_2737 0.87 +0.1 2,890,943 + HP15_2738 0.25 -0.2 2,890,943 + HP15_2738 0.25 +0.1 2,891,059 - HP15_2738 0.47 -1.2 2,891,116 - HP15_2738 0.58 +0.2 2,891,145 - HP15_2738 0.64 +0.2 2,891,145 - HP15_2738 0.64 -0.9 2,891,177 - HP15_2738 0.70 +0.7 2,891,218 - HP15_2738 0.78 -1.5 2,891,234 + HP15_2738 0.81 -1.1 2,891,234 + HP15_2738 0.81 -1.0 2,891,234 + HP15_2738 0.81 -0.9 2,891,407 - +1.6 2,891,620 + HP15_2739 0.43 +0.4 2,891,687 - HP15_2739 0.54 +1.4 2,891,756 + HP15_2739 0.65 +1.2 2,891,787 + HP15_2739 0.70 +0.1 2,891,787 + HP15_2739 0.70 +2.3 2,891,812 - HP15_2739 0.74 -2.9 2,891,911 - HP15_2739 0.90 +2.1 2,891,970 - +0.8 2,892,023 + +0.6 2,892,041 - +0.3 2,892,085 + +1.0 2,892,136 + -2.4 2,892,144 - +0.7 2,892,156 + +2.4 2,892,225 - +1.1 2,892,237 - -1.5 2,892,237 - +0.3 2,892,270 + -0.2 2,892,307 - -1.5 2,892,317 - -0.4 2,892,425 - -1.1 2,892,442 - -0.6 2,892,614 + HP15_2740 0.19 -3.4 2,892,726 - HP15_2740 0.31 +0.1 2,892,766 + HP15_2740 0.36 -0.0 2,892,786 + HP15_2740 0.38 -0.8 2,892,817 - HP15_2740 0.41 +1.9 2,892,926 - HP15_2740 0.53 -0.9
Or see this region's nucleotide sequence