Strain Fitness in Marinobacter adhaerens HP15 around HP15_2739

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2737 and HP15_2738 are separated by 10 nucleotidesHP15_2738 and HP15_2739 are separated by 13 nucleotidesHP15_2739 and HP15_2740 are separated by 471 nucleotides HP15_2737: HP15_2737 - Coq7 family protein, at 2,890,225 to 2,890,803 _2737 HP15_2738: HP15_2738 - hypothetical protein, at 2,890,814 to 2,891,332 _2738 HP15_2739: HP15_2739 - DNA-3-methyladenine glycosidase II, at 2,891,346 to 2,891,975 _2739 HP15_2740: HP15_2740 - membrane protein containing DUF6, transmembrane, at 2,892,447 to 2,893,343 _2740 Position (kb) 2891 2892Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2890.436 kb on + strand, within HP15_2737at 2890.444 kb on - strand, within HP15_2737at 2890.444 kb on - strand, within HP15_2737at 2890.562 kb on - strand, within HP15_2737at 2890.597 kb on - strand, within HP15_2737at 2890.662 kb on - strand, within HP15_2737at 2890.664 kb on - strand, within HP15_2737at 2890.731 kb on + strand, within HP15_2737at 2890.943 kb on + strand, within HP15_2738at 2890.943 kb on + strand, within HP15_2738at 2891.059 kb on - strand, within HP15_2738at 2891.116 kb on - strand, within HP15_2738at 2891.145 kb on - strand, within HP15_2738at 2891.145 kb on - strand, within HP15_2738at 2891.177 kb on - strand, within HP15_2738at 2891.218 kb on - strand, within HP15_2738at 2891.234 kb on + strand, within HP15_2738at 2891.234 kb on + strand, within HP15_2738at 2891.234 kb on + strand, within HP15_2738at 2891.407 kb on - strandat 2891.620 kb on + strand, within HP15_2739at 2891.687 kb on - strand, within HP15_2739at 2891.756 kb on + strand, within HP15_2739at 2891.787 kb on + strand, within HP15_2739at 2891.787 kb on + strand, within HP15_2739at 2891.812 kb on - strand, within HP15_2739at 2891.911 kb on - strand, within HP15_2739at 2891.970 kb on - strandat 2892.023 kb on + strandat 2892.041 kb on - strandat 2892.085 kb on + strandat 2892.136 kb on + strandat 2892.144 kb on - strandat 2892.156 kb on + strandat 2892.225 kb on - strandat 2892.237 kb on - strandat 2892.237 kb on - strandat 2892.270 kb on + strandat 2892.307 kb on - strandat 2892.317 kb on - strandat 2892.425 kb on - strandat 2892.442 kb on - strandat 2892.614 kb on + strand, within HP15_2740at 2892.726 kb on - strand, within HP15_2740at 2892.766 kb on + strand, within HP15_2740at 2892.786 kb on + strand, within HP15_2740at 2892.817 kb on - strand, within HP15_2740at 2892.926 kb on - strand, within HP15_2740

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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2,890,436 + HP15_2737 0.36 -1.3
2,890,444 - HP15_2737 0.38 +0.9
2,890,444 - HP15_2737 0.38 +2.0
2,890,562 - HP15_2737 0.58 +0.7
2,890,597 - HP15_2737 0.64 +0.7
2,890,662 - HP15_2737 0.75 -1.3
2,890,664 - HP15_2737 0.76 -0.1
2,890,731 + HP15_2737 0.87 +0.1
2,890,943 + HP15_2738 0.25 -0.2
2,890,943 + HP15_2738 0.25 +0.1
2,891,059 - HP15_2738 0.47 -1.2
2,891,116 - HP15_2738 0.58 +0.2
2,891,145 - HP15_2738 0.64 +0.2
2,891,145 - HP15_2738 0.64 -0.9
2,891,177 - HP15_2738 0.70 +0.7
2,891,218 - HP15_2738 0.78 -1.5
2,891,234 + HP15_2738 0.81 -1.1
2,891,234 + HP15_2738 0.81 -1.0
2,891,234 + HP15_2738 0.81 -0.9
2,891,407 - +1.6
2,891,620 + HP15_2739 0.43 +0.4
2,891,687 - HP15_2739 0.54 +1.4
2,891,756 + HP15_2739 0.65 +1.2
2,891,787 + HP15_2739 0.70 +0.1
2,891,787 + HP15_2739 0.70 +2.3
2,891,812 - HP15_2739 0.74 -2.9
2,891,911 - HP15_2739 0.90 +2.1
2,891,970 - +0.8
2,892,023 + +0.6
2,892,041 - +0.3
2,892,085 + +1.0
2,892,136 + -2.4
2,892,144 - +0.7
2,892,156 + +2.4
2,892,225 - +1.1
2,892,237 - -1.5
2,892,237 - +0.3
2,892,270 + -0.2
2,892,307 - -1.5
2,892,317 - -0.4
2,892,425 - -1.1
2,892,442 - -0.6
2,892,614 + HP15_2740 0.19 -3.4
2,892,726 - HP15_2740 0.31 +0.1
2,892,766 + HP15_2740 0.36 -0.0
2,892,786 + HP15_2740 0.38 -0.8
2,892,817 - HP15_2740 0.41 +1.9
2,892,926 - HP15_2740 0.53 -0.9

Or see this region's nucleotide sequence