Strain Fitness in Marinobacter adhaerens HP15 around HP15_2735

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2734 and HP15_2735 are separated by 118 nucleotidesHP15_2735 and HP15_2736 are separated by 48 nucleotidesHP15_2736 and HP15_2737 are separated by 187 nucleotides HP15_2734: HP15_2734 - conserved hypothetical protein, at 2,887,325 to 2,888,482 _2734 HP15_2735: HP15_2735 - diguanylate cyclase with PAS/PAC sensor, at 2,888,601 to 2,889,539 _2735 HP15_2736: HP15_2736 - pseudoazurin, at 2,889,588 to 2,890,037 _2736 HP15_2737: HP15_2737 - Coq7 family protein, at 2,890,225 to 2,890,803 _2737 Position (kb) 2888 2889 2890Strain fitness (log2 ratio) -2 -1 0 1 2at 2887.623 kb on - strand, within HP15_2734at 2887.712 kb on - strand, within HP15_2734at 2887.722 kb on - strand, within HP15_2734at 2887.734 kb on - strand, within HP15_2734at 2887.734 kb on - strand, within HP15_2734at 2887.917 kb on + strand, within HP15_2734at 2887.925 kb on - strand, within HP15_2734at 2888.029 kb on + strand, within HP15_2734at 2888.029 kb on + strand, within HP15_2734at 2888.037 kb on - strand, within HP15_2734at 2888.148 kb on + strand, within HP15_2734at 2888.181 kb on - strand, within HP15_2734at 2888.261 kb on - strand, within HP15_2734at 2888.345 kb on - strand, within HP15_2734at 2888.511 kb on + strandat 2888.511 kb on + strandat 2888.548 kb on - strandat 2888.571 kb on + strandat 2888.574 kb on - strandat 2888.579 kb on - strandat 2888.622 kb on - strandat 2888.625 kb on + strandat 2888.663 kb on + strandat 2888.748 kb on + strand, within HP15_2735at 2888.775 kb on - strand, within HP15_2735at 2888.782 kb on - strand, within HP15_2735at 2889.051 kb on + strand, within HP15_2735at 2889.157 kb on - strand, within HP15_2735at 2889.163 kb on + strand, within HP15_2735at 2889.179 kb on - strand, within HP15_2735at 2889.416 kb on - strand, within HP15_2735at 2889.714 kb on + strand, within HP15_2736at 2889.720 kb on + strand, within HP15_2736at 2889.752 kb on + strand, within HP15_2736at 2889.752 kb on + strand, within HP15_2736at 2889.773 kb on + strand, within HP15_2736at 2889.812 kb on - strand, within HP15_2736at 2889.820 kb on - strand, within HP15_2736at 2889.822 kb on + strand, within HP15_2736at 2889.830 kb on + strand, within HP15_2736at 2889.844 kb on + strand, within HP15_2736at 2889.846 kb on + strand, within HP15_2736at 2889.846 kb on + strand, within HP15_2736at 2889.854 kb on - strand, within HP15_2736at 2890.006 kb on + strandat 2890.077 kb on + strandat 2890.096 kb on + strandat 2890.120 kb on + strandat 2890.250 kb on - strandat 2890.264 kb on - strandat 2890.332 kb on - strand, within HP15_2737at 2890.436 kb on + strand, within HP15_2737at 2890.444 kb on - strand, within HP15_2737at 2890.444 kb on - strand, within HP15_2737

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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2,887,623 - HP15_2734 0.26 -0.5
2,887,712 - HP15_2734 0.33 -1.5
2,887,722 - HP15_2734 0.34 +0.7
2,887,734 - HP15_2734 0.35 -0.2
2,887,734 - HP15_2734 0.35 -0.1
2,887,917 + HP15_2734 0.51 -0.8
2,887,925 - HP15_2734 0.52 +0.8
2,888,029 + HP15_2734 0.61 -0.0
2,888,029 + HP15_2734 0.61 -0.6
2,888,037 - HP15_2734 0.61 +0.7
2,888,148 + HP15_2734 0.71 -0.4
2,888,181 - HP15_2734 0.74 +0.3
2,888,261 - HP15_2734 0.81 +0.4
2,888,345 - HP15_2734 0.88 +0.4
2,888,511 + -2.3
2,888,511 + -0.0
2,888,548 - -1.9
2,888,571 + +0.6
2,888,574 - +0.7
2,888,579 - +1.1
2,888,622 - -0.6
2,888,625 + -2.3
2,888,663 + +1.7
2,888,748 + HP15_2735 0.16 -0.1
2,888,775 - HP15_2735 0.19 -0.1
2,888,782 - HP15_2735 0.19 -2.5
2,889,051 + HP15_2735 0.48 +2.0
2,889,157 - HP15_2735 0.59 +2.6
2,889,163 + HP15_2735 0.60 -2.3
2,889,179 - HP15_2735 0.62 +0.1
2,889,416 - HP15_2735 0.87 +1.1
2,889,714 + HP15_2736 0.28 +0.3
2,889,720 + HP15_2736 0.29 -2.4
2,889,752 + HP15_2736 0.36 -2.6
2,889,752 + HP15_2736 0.36 +1.6
2,889,773 + HP15_2736 0.41 -1.3
2,889,812 - HP15_2736 0.50 +1.7
2,889,820 - HP15_2736 0.52 +0.2
2,889,822 + HP15_2736 0.52 +0.3
2,889,830 + HP15_2736 0.54 -0.4
2,889,844 + HP15_2736 0.57 +0.3
2,889,846 + HP15_2736 0.57 -0.3
2,889,846 + HP15_2736 0.57 +1.1
2,889,854 - HP15_2736 0.59 -1.9
2,890,006 + +1.1
2,890,077 + -0.2
2,890,096 + +1.4
2,890,120 + +0.3
2,890,250 - -0.9
2,890,264 - -0.1
2,890,332 - HP15_2737 0.18 -2.1
2,890,436 + HP15_2737 0.36 -1.3
2,890,444 - HP15_2737 0.38 +0.9
2,890,444 - HP15_2737 0.38 +2.0

Or see this region's nucleotide sequence