Strain Fitness in Marinobacter adhaerens HP15 around HP15_2732

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2731 and HP15_2732 are separated by 210 nucleotidesHP15_2732 and HP15_2733 are separated by 200 nucleotides HP15_2731: HP15_2731 - choline/carnitine/betaine transporter, at 2,882,201 to 2,883,685 _2731 HP15_2732: HP15_2732 - drug resistance transporter, Bcr/CflA subfamily, at 2,883,896 to 2,885,089 _2732 HP15_2733: HP15_2733 - protein containing sulphatase-modifying factor domain, at 2,885,290 to 2,887,350 _2733 Position (kb) 2883 2884 2885 2886Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2882.961 kb on + strand, within HP15_2731at 2882.969 kb on - strand, within HP15_2731at 2883.002 kb on + strand, within HP15_2731at 2883.103 kb on + strand, within HP15_2731at 2883.153 kb on + strand, within HP15_2731at 2883.219 kb on + strand, within HP15_2731at 2883.227 kb on - strand, within HP15_2731at 2883.232 kb on - strand, within HP15_2731at 2883.245 kb on + strand, within HP15_2731at 2883.253 kb on - strand, within HP15_2731at 2883.277 kb on - strand, within HP15_2731at 2883.279 kb on + strand, within HP15_2731at 2883.287 kb on - strand, within HP15_2731at 2883.443 kb on - strand, within HP15_2731at 2883.479 kb on - strand, within HP15_2731at 2883.515 kb on + strand, within HP15_2731at 2883.515 kb on + strand, within HP15_2731at 2883.515 kb on + strand, within HP15_2731at 2883.515 kb on + strand, within HP15_2731at 2883.515 kb on + strand, within HP15_2731at 2883.520 kb on + strand, within HP15_2731at 2883.523 kb on - strand, within HP15_2731at 2883.523 kb on - strand, within HP15_2731at 2883.523 kb on - strand, within HP15_2731at 2883.523 kb on - strand, within HP15_2731at 2883.523 kb on - strand, within HP15_2731at 2883.606 kb on + strandat 2883.696 kb on + strandat 2883.704 kb on - strandat 2883.753 kb on + strandat 2883.760 kb on + strandat 2883.784 kb on + strandat 2883.896 kb on - strandat 2883.933 kb on - strandat 2883.933 kb on - strandat 2884.058 kb on - strand, within HP15_2732at 2884.104 kb on + strand, within HP15_2732at 2884.162 kb on + strand, within HP15_2732at 2884.212 kb on - strand, within HP15_2732at 2884.229 kb on + strand, within HP15_2732at 2884.272 kb on + strand, within HP15_2732at 2884.368 kb on - strand, within HP15_2732at 2884.368 kb on - strand, within HP15_2732at 2884.368 kb on - strand, within HP15_2732at 2884.437 kb on + strand, within HP15_2732at 2884.573 kb on + strand, within HP15_2732at 2884.671 kb on + strand, within HP15_2732at 2884.783 kb on + strand, within HP15_2732at 2884.791 kb on - strand, within HP15_2732at 2884.844 kb on - strand, within HP15_2732at 2884.899 kb on + strand, within HP15_2732at 2884.985 kb on + strandat 2884.988 kb on - strandat 2884.993 kb on - strandat 2884.993 kb on - strandat 2884.993 kb on - strandat 2884.993 kb on - strandat 2884.993 kb on - strandat 2884.993 kb on - strandat 2885.155 kb on + strandat 2885.267 kb on - strandat 2885.525 kb on + strand, within HP15_2733at 2885.611 kb on - strand, within HP15_2733at 2885.611 kb on - strand, within HP15_2733at 2885.615 kb on + strand, within HP15_2733at 2885.740 kb on - strand, within HP15_2733at 2885.835 kb on - strand, within HP15_2733at 2885.859 kb on + strand, within HP15_2733at 2885.931 kb on + strand, within HP15_2733at 2885.931 kb on + strand, within HP15_2733at 2885.931 kb on + strand, within HP15_2733at 2885.939 kb on - strand, within HP15_2733at 2885.939 kb on - strand, within HP15_2733at 2885.939 kb on - strand, within HP15_2733at 2885.985 kb on + strand, within HP15_2733at 2885.985 kb on + strand, within HP15_2733at 2886.017 kb on - strand, within HP15_2733at 2886.019 kb on + strand, within HP15_2733

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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2,882,961 + HP15_2731 0.51 +0.5
2,882,969 - HP15_2731 0.52 -0.5
2,883,002 + HP15_2731 0.54 +1.0
2,883,103 + HP15_2731 0.61 -0.1
2,883,153 + HP15_2731 0.64 -0.5
2,883,219 + HP15_2731 0.69 +0.6
2,883,227 - HP15_2731 0.69 -0.2
2,883,232 - HP15_2731 0.69 +0.1
2,883,245 + HP15_2731 0.70 -0.1
2,883,253 - HP15_2731 0.71 -0.7
2,883,277 - HP15_2731 0.72 -3.6
2,883,279 + HP15_2731 0.73 +0.0
2,883,287 - HP15_2731 0.73 -0.8
2,883,443 - HP15_2731 0.84 +0.5
2,883,479 - HP15_2731 0.86 -0.7
2,883,515 + HP15_2731 0.88 -0.0
2,883,515 + HP15_2731 0.88 -1.7
2,883,515 + HP15_2731 0.88 -0.3
2,883,515 + HP15_2731 0.88 +0.5
2,883,515 + HP15_2731 0.88 +0.9
2,883,520 + HP15_2731 0.89 -0.2
2,883,523 - HP15_2731 0.89 -0.0
2,883,523 - HP15_2731 0.89 +0.1
2,883,523 - HP15_2731 0.89 +1.0
2,883,523 - HP15_2731 0.89 +1.2
2,883,523 - HP15_2731 0.89 -0.1
2,883,606 + +1.1
2,883,696 + +0.2
2,883,704 - +1.0
2,883,753 + -1.3
2,883,760 + +0.8
2,883,784 + +0.5
2,883,896 - +1.2
2,883,933 - -1.8
2,883,933 - +0.2
2,884,058 - HP15_2732 0.14 -3.3
2,884,104 + HP15_2732 0.17 -0.1
2,884,162 + HP15_2732 0.22 -0.1
2,884,212 - HP15_2732 0.26 +1.1
2,884,229 + HP15_2732 0.28 +0.0
2,884,272 + HP15_2732 0.31 -0.3
2,884,368 - HP15_2732 0.40 +0.0
2,884,368 - HP15_2732 0.40 +0.1
2,884,368 - HP15_2732 0.40 +0.6
2,884,437 + HP15_2732 0.45 -1.9
2,884,573 + HP15_2732 0.57 +0.1
2,884,671 + HP15_2732 0.65 -0.2
2,884,783 + HP15_2732 0.74 +0.1
2,884,791 - HP15_2732 0.75 +2.7
2,884,844 - HP15_2732 0.79 -0.1
2,884,899 + HP15_2732 0.84 +0.5
2,884,985 + -0.0
2,884,988 - +0.0
2,884,993 - +2.8
2,884,993 - -1.6
2,884,993 - +1.8
2,884,993 - -1.6
2,884,993 - -1.0
2,884,993 - -0.1
2,885,155 + +0.5
2,885,267 - +0.5
2,885,525 + HP15_2733 0.11 -2.8
2,885,611 - HP15_2733 0.16 -0.2
2,885,611 - HP15_2733 0.16 +0.6
2,885,615 + HP15_2733 0.16 +0.9
2,885,740 - HP15_2733 0.22 -0.3
2,885,835 - HP15_2733 0.26 +0.7
2,885,859 + HP15_2733 0.28 +0.3
2,885,931 + HP15_2733 0.31 -0.2
2,885,931 + HP15_2733 0.31 +0.1
2,885,931 + HP15_2733 0.31 -1.4
2,885,939 - HP15_2733 0.31 +0.6
2,885,939 - HP15_2733 0.31 -2.5
2,885,939 - HP15_2733 0.31 +0.2
2,885,985 + HP15_2733 0.34 +0.8
2,885,985 + HP15_2733 0.34 +0.5
2,886,017 - HP15_2733 0.35 +0.3
2,886,019 + HP15_2733 0.35 +2.5

Or see this region's nucleotide sequence