Strain Fitness in Marinobacter adhaerens HP15 around HP15_2655

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2653 and HP15_2654 are separated by 84 nucleotidesHP15_2654 and HP15_2655 overlap by 24 nucleotidesHP15_2655 and HP15_2656 are separated by 28 nucleotides HP15_2653: HP15_2653 - transcriptional regulator, LysR family protein, at 2,802,889 to 2,803,797 _2653 HP15_2654: HP15_2654 - hypothetical protein, at 2,803,882 to 2,804,007 _2654 HP15_2655: HP15_2655 - methylmalonate-semialdehyde dehydrogenase, at 2,803,984 to 2,805,495 _2655 HP15_2656: HP15_2656 - glucose-methanol-choline oxidoreductase, at 2,805,524 to 2,807,194 _2656 Position (kb) 2803 2804 2805 2806Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2803.082 kb on + strand, within HP15_2653at 2803.090 kb on - strand, within HP15_2653at 2803.092 kb on + strand, within HP15_2653at 2803.107 kb on + strand, within HP15_2653at 2803.130 kb on - strand, within HP15_2653at 2803.160 kb on - strand, within HP15_2653at 2803.163 kb on + strand, within HP15_2653at 2803.171 kb on - strand, within HP15_2653at 2803.185 kb on - strand, within HP15_2653at 2803.294 kb on + strand, within HP15_2653at 2803.382 kb on + strand, within HP15_2653at 2803.382 kb on + strand, within HP15_2653at 2803.382 kb on + strand, within HP15_2653at 2803.390 kb on - strand, within HP15_2653at 2803.390 kb on - strand, within HP15_2653at 2803.392 kb on + strand, within HP15_2653at 2803.409 kb on + strand, within HP15_2653at 2803.415 kb on + strand, within HP15_2653at 2803.460 kb on - strand, within HP15_2653at 2803.462 kb on + strand, within HP15_2653at 2803.635 kb on - strand, within HP15_2653at 2803.788 kb on - strandat 2804.236 kb on - strand, within HP15_2655at 2804.370 kb on - strand, within HP15_2655at 2804.495 kb on + strand, within HP15_2655at 2804.495 kb on + strand, within HP15_2655at 2804.508 kb on - strand, within HP15_2655at 2804.775 kb on + strand, within HP15_2655at 2804.911 kb on - strand, within HP15_2655at 2804.974 kb on + strand, within HP15_2655at 2804.993 kb on + strand, within HP15_2655at 2805.017 kb on + strand, within HP15_2655at 2805.017 kb on + strand, within HP15_2655at 2805.052 kb on + strand, within HP15_2655at 2805.160 kb on + strand, within HP15_2655at 2805.168 kb on - strand, within HP15_2655at 2805.168 kb on - strand, within HP15_2655at 2805.168 kb on - strand, within HP15_2655at 2805.168 kb on - strand, within HP15_2655at 2805.168 kb on - strand, within HP15_2655at 2805.299 kb on - strand, within HP15_2655at 2805.446 kb on - strandat 2805.672 kb on + strandat 2805.753 kb on + strand, within HP15_2656at 2805.847 kb on + strand, within HP15_2656at 2805.861 kb on - strand, within HP15_2656at 2805.985 kb on - strand, within HP15_2656at 2806.128 kb on + strand, within HP15_2656at 2806.208 kb on - strand, within HP15_2656

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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2,803,082 + HP15_2653 0.21 -0.0
2,803,090 - HP15_2653 0.22 +1.3
2,803,092 + HP15_2653 0.22 -2.9
2,803,107 + HP15_2653 0.24 -1.2
2,803,130 - HP15_2653 0.27 -2.0
2,803,160 - HP15_2653 0.30 -0.7
2,803,163 + HP15_2653 0.30 -2.0
2,803,171 - HP15_2653 0.31 -0.4
2,803,185 - HP15_2653 0.33 +1.7
2,803,294 + HP15_2653 0.45 -3.6
2,803,382 + HP15_2653 0.54 +0.7
2,803,382 + HP15_2653 0.54 -0.1
2,803,382 + HP15_2653 0.54 +0.0
2,803,390 - HP15_2653 0.55 +0.6
2,803,390 - HP15_2653 0.55 -0.1
2,803,392 + HP15_2653 0.55 +1.1
2,803,409 + HP15_2653 0.57 +1.7
2,803,415 + HP15_2653 0.58 +1.1
2,803,460 - HP15_2653 0.63 -1.0
2,803,462 + HP15_2653 0.63 -0.7
2,803,635 - HP15_2653 0.82 -2.4
2,803,788 - -0.5
2,804,236 - HP15_2655 0.17 +0.7
2,804,370 - HP15_2655 0.26 -0.1
2,804,495 + HP15_2655 0.34 -1.4
2,804,495 + HP15_2655 0.34 -0.3
2,804,508 - HP15_2655 0.35 +1.1
2,804,775 + HP15_2655 0.52 +0.5
2,804,911 - HP15_2655 0.61 -1.5
2,804,974 + HP15_2655 0.65 -2.5
2,804,993 + HP15_2655 0.67 +0.7
2,805,017 + HP15_2655 0.68 +0.3
2,805,017 + HP15_2655 0.68 -2.7
2,805,052 + HP15_2655 0.71 +0.2
2,805,160 + HP15_2655 0.78 +2.0
2,805,168 - HP15_2655 0.78 -1.3
2,805,168 - HP15_2655 0.78 -2.7
2,805,168 - HP15_2655 0.78 -0.1
2,805,168 - HP15_2655 0.78 +0.1
2,805,168 - HP15_2655 0.78 -0.3
2,805,299 - HP15_2655 0.87 -0.9
2,805,446 - +0.5
2,805,672 + +0.7
2,805,753 + HP15_2656 0.14 +3.0
2,805,847 + HP15_2656 0.19 +0.7
2,805,861 - HP15_2656 0.20 -0.9
2,805,985 - HP15_2656 0.28 +0.1
2,806,128 + HP15_2656 0.36 +1.1
2,806,208 - HP15_2656 0.41 -0.5

Or see this region's nucleotide sequence