Strain Fitness in Marinobacter adhaerens HP15 around HP15_2606

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2605 and HP15_2606 overlap by 1 nucleotidesHP15_2606 and HP15_2607 are separated by 2 nucleotidesHP15_2607 and HP15_2608 are separated by 1 nucleotides HP15_2605: HP15_2605 - regulatory protein, LysR, at 2,755,263 to 2,756,933 _2605 HP15_2606: HP15_2606 - transporter, at 2,756,933 to 2,759,323 _2606 HP15_2607: HP15_2607 - BNR repeat glycosyl hydrolase-like protein, at 2,759,326 to 2,760,303 _2607 HP15_2608: HP15_2608 - hydroxymethylglutaryl-CoA lyase, at 2,760,305 to 2,761,228 _2608 Position (kb) 2756 2757 2758 2759 2760Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2755.942 kb on - strand, within HP15_2605at 2756.038 kb on - strand, within HP15_2605at 2756.056 kb on + strand, within HP15_2605at 2756.056 kb on + strand, within HP15_2605at 2756.107 kb on + strand, within HP15_2605at 2756.115 kb on - strand, within HP15_2605at 2756.156 kb on - strand, within HP15_2605at 2756.241 kb on + strand, within HP15_2605at 2756.433 kb on - strand, within HP15_2605at 2756.515 kb on - strand, within HP15_2605at 2756.515 kb on - strand, within HP15_2605at 2756.582 kb on + strand, within HP15_2605at 2756.665 kb on - strand, within HP15_2605at 2756.676 kb on + strand, within HP15_2605at 2756.694 kb on - strand, within HP15_2605at 2756.700 kb on + strand, within HP15_2605at 2756.749 kb on - strand, within HP15_2605at 2756.754 kb on + strand, within HP15_2605at 2756.826 kb on - strandat 2756.851 kb on + strandat 2756.854 kb on - strandat 2756.854 kb on - strandat 2756.859 kb on - strandat 2756.866 kb on - strandat 2756.956 kb on + strandat 2757.152 kb on + strandat 2757.286 kb on - strand, within HP15_2606at 2757.292 kb on - strand, within HP15_2606at 2757.296 kb on + strand, within HP15_2606at 2757.362 kb on + strand, within HP15_2606at 2757.374 kb on + strand, within HP15_2606at 2757.471 kb on + strand, within HP15_2606at 2757.676 kb on + strand, within HP15_2606at 2757.814 kb on + strand, within HP15_2606at 2757.883 kb on - strand, within HP15_2606at 2757.932 kb on + strand, within HP15_2606at 2757.962 kb on + strand, within HP15_2606at 2757.964 kb on + strand, within HP15_2606at 2757.970 kb on - strand, within HP15_2606at 2757.978 kb on + strand, within HP15_2606at 2758.003 kb on + strand, within HP15_2606at 2758.003 kb on + strand, within HP15_2606at 2758.003 kb on + strand, within HP15_2606at 2758.011 kb on - strand, within HP15_2606at 2758.039 kb on + strand, within HP15_2606at 2758.065 kb on - strand, within HP15_2606at 2758.128 kb on + strand, within HP15_2606at 2758.136 kb on - strand, within HP15_2606at 2758.143 kb on + strand, within HP15_2606at 2758.176 kb on + strand, within HP15_2606at 2758.181 kb on + strand, within HP15_2606at 2758.194 kb on - strand, within HP15_2606at 2758.197 kb on + strand, within HP15_2606at 2758.299 kb on - strand, within HP15_2606at 2758.338 kb on + strand, within HP15_2606at 2758.373 kb on + strand, within HP15_2606at 2758.461 kb on - strand, within HP15_2606at 2758.470 kb on + strand, within HP15_2606at 2758.478 kb on - strand, within HP15_2606at 2758.527 kb on - strand, within HP15_2606at 2758.593 kb on + strand, within HP15_2606at 2758.637 kb on + strand, within HP15_2606at 2758.751 kb on + strand, within HP15_2606at 2758.760 kb on - strand, within HP15_2606at 2758.760 kb on - strand, within HP15_2606at 2758.836 kb on - strand, within HP15_2606at 2759.008 kb on + strand, within HP15_2606at 2759.033 kb on + strand, within HP15_2606at 2759.070 kb on - strand, within HP15_2606at 2759.252 kb on + strandat 2759.332 kb on - strandat 2759.414 kb on - strandat 2759.425 kb on + strand, within HP15_2607at 2759.431 kb on - strand, within HP15_2607at 2759.697 kb on + strand, within HP15_2607at 2759.728 kb on - strand, within HP15_2607at 2759.810 kb on - strand, within HP15_2607at 2759.911 kb on - strand, within HP15_2607at 2759.999 kb on + strand, within HP15_2607at 2760.087 kb on + strand, within HP15_2607at 2760.095 kb on - strand, within HP15_2607at 2760.134 kb on + strand, within HP15_2607at 2760.172 kb on + strand, within HP15_2607at 2760.224 kb on - strandat 2760.245 kb on + strandat 2760.258 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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2,755,942 - HP15_2605 0.41 +0.5
2,756,038 - HP15_2605 0.46 +1.0
2,756,056 + HP15_2605 0.47 -1.2
2,756,056 + HP15_2605 0.47 +0.1
2,756,107 + HP15_2605 0.51 -1.5
2,756,115 - HP15_2605 0.51 -1.5
2,756,156 - HP15_2605 0.53 -0.2
2,756,241 + HP15_2605 0.59 +0.2
2,756,433 - HP15_2605 0.70 -0.4
2,756,515 - HP15_2605 0.75 -1.0
2,756,515 - HP15_2605 0.75 +0.8
2,756,582 + HP15_2605 0.79 +1.1
2,756,665 - HP15_2605 0.84 -3.3
2,756,676 + HP15_2605 0.85 -1.5
2,756,694 - HP15_2605 0.86 +0.5
2,756,700 + HP15_2605 0.86 +0.1
2,756,749 - HP15_2605 0.89 -0.3
2,756,754 + HP15_2605 0.89 +0.6
2,756,826 - +0.5
2,756,851 + +0.4
2,756,854 - -1.0
2,756,854 - -1.2
2,756,859 - -0.7
2,756,866 - -0.2
2,756,956 + +0.9
2,757,152 + +0.7
2,757,286 - HP15_2606 0.15 +1.9
2,757,292 - HP15_2606 0.15 -1.1
2,757,296 + HP15_2606 0.15 -0.6
2,757,362 + HP15_2606 0.18 -0.3
2,757,374 + HP15_2606 0.18 -2.0
2,757,471 + HP15_2606 0.23 +1.6
2,757,676 + HP15_2606 0.31 -2.7
2,757,814 + HP15_2606 0.37 +0.5
2,757,883 - HP15_2606 0.40 -0.0
2,757,932 + HP15_2606 0.42 +1.1
2,757,962 + HP15_2606 0.43 +2.5
2,757,964 + HP15_2606 0.43 -0.5
2,757,970 - HP15_2606 0.43 +0.9
2,757,978 + HP15_2606 0.44 +0.6
2,758,003 + HP15_2606 0.45 +1.5
2,758,003 + HP15_2606 0.45 +1.6
2,758,003 + HP15_2606 0.45 -2.0
2,758,011 - HP15_2606 0.45 -0.3
2,758,039 + HP15_2606 0.46 -0.4
2,758,065 - HP15_2606 0.47 -0.4
2,758,128 + HP15_2606 0.50 -1.9
2,758,136 - HP15_2606 0.50 +0.6
2,758,143 + HP15_2606 0.51 -2.3
2,758,176 + HP15_2606 0.52 +0.8
2,758,181 + HP15_2606 0.52 +1.9
2,758,194 - HP15_2606 0.53 +1.7
2,758,197 + HP15_2606 0.53 -3.3
2,758,299 - HP15_2606 0.57 +2.4
2,758,338 + HP15_2606 0.59 -1.2
2,758,373 + HP15_2606 0.60 +0.0
2,758,461 - HP15_2606 0.64 +0.3
2,758,470 + HP15_2606 0.64 +0.0
2,758,478 - HP15_2606 0.65 +0.7
2,758,527 - HP15_2606 0.67 -2.0
2,758,593 + HP15_2606 0.69 -1.5
2,758,637 + HP15_2606 0.71 -2.8
2,758,751 + HP15_2606 0.76 +1.2
2,758,760 - HP15_2606 0.76 +1.5
2,758,760 - HP15_2606 0.76 +1.0
2,758,836 - HP15_2606 0.80 -0.8
2,759,008 + HP15_2606 0.87 +1.8
2,759,033 + HP15_2606 0.88 +0.9
2,759,070 - HP15_2606 0.89 -1.8
2,759,252 + -0.4
2,759,332 - -0.1
2,759,414 - +0.4
2,759,425 + HP15_2607 0.10 +0.8
2,759,431 - HP15_2607 0.11 +1.5
2,759,697 + HP15_2607 0.38 +0.4
2,759,728 - HP15_2607 0.41 -1.6
2,759,810 - HP15_2607 0.49 -0.9
2,759,911 - HP15_2607 0.60 -0.4
2,759,999 + HP15_2607 0.69 -0.7
2,760,087 + HP15_2607 0.78 +1.2
2,760,095 - HP15_2607 0.79 +2.0
2,760,134 + HP15_2607 0.83 -0.5
2,760,172 + HP15_2607 0.87 +0.5
2,760,224 - +0.9
2,760,245 + +0.2
2,760,258 - +0.2

Or see this region's nucleotide sequence