Strain Fitness in Marinobacter adhaerens HP15 around HP15_2560

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2559 and HP15_2560 are separated by 171 nucleotidesHP15_2560 and HP15_2561 overlap by 27 nucleotidesHP15_2561 and HP15_2562 are separated by 10 nucleotides HP15_2559: HP15_2559 - membrane protein containing DUF6, transmembrane, at 2,704,923 to 2,705,828 _2559 HP15_2560: HP15_2560 - TRAP dicarboxylate transporter- DctP subunit, at 2,706,000 to 2,707,103 _2560 HP15_2561: HP15_2561 - MscS Mechanosensitive ion channel, at 2,707,077 to 2,707,880 _2561 HP15_2562: HP15_2562 - conserved hypothetical protein, at 2,707,891 to 2,709,126 _2562 Position (kb) 2705 2706 2707 2708Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2705.024 kb on - strand, within HP15_2559at 2705.029 kb on - strand, within HP15_2559at 2705.034 kb on - strand, within HP15_2559at 2705.086 kb on + strand, within HP15_2559at 2705.162 kb on + strand, within HP15_2559at 2705.306 kb on + strand, within HP15_2559at 2705.323 kb on + strand, within HP15_2559at 2705.351 kb on + strand, within HP15_2559at 2705.390 kb on - strand, within HP15_2559at 2705.430 kb on + strand, within HP15_2559at 2705.493 kb on + strand, within HP15_2559at 2705.512 kb on + strand, within HP15_2559at 2705.587 kb on + strand, within HP15_2559at 2705.668 kb on - strand, within HP15_2559at 2705.778 kb on + strandat 2705.786 kb on - strandat 2705.931 kb on - strandat 2706.059 kb on - strandat 2706.085 kb on - strandat 2706.127 kb on + strand, within HP15_2560at 2706.306 kb on + strand, within HP15_2560at 2706.379 kb on - strand, within HP15_2560at 2706.419 kb on - strand, within HP15_2560at 2706.421 kb on + strand, within HP15_2560at 2706.429 kb on - strand, within HP15_2560at 2706.502 kb on - strand, within HP15_2560at 2706.564 kb on + strand, within HP15_2560at 2706.592 kb on + strand, within HP15_2560at 2706.607 kb on + strand, within HP15_2560at 2706.646 kb on - strand, within HP15_2560at 2706.667 kb on - strand, within HP15_2560at 2706.720 kb on + strand, within HP15_2560at 2706.728 kb on - strand, within HP15_2560at 2706.728 kb on - strand, within HP15_2560at 2706.738 kb on - strand, within HP15_2560at 2706.851 kb on + strand, within HP15_2560at 2706.873 kb on - strand, within HP15_2560at 2706.986 kb on + strand, within HP15_2560at 2707.083 kb on - strandat 2707.083 kb on - strandat 2707.121 kb on + strandat 2707.198 kb on + strand, within HP15_2561at 2707.279 kb on + strand, within HP15_2561at 2707.356 kb on + strand, within HP15_2561at 2707.356 kb on + strand, within HP15_2561at 2707.483 kb on + strand, within HP15_2561at 2707.483 kb on + strand, within HP15_2561at 2707.549 kb on - strand, within HP15_2561at 2707.550 kb on - strand, within HP15_2561at 2707.598 kb on - strand, within HP15_2561at 2707.653 kb on + strand, within HP15_2561at 2707.785 kb on + strand, within HP15_2561at 2707.793 kb on - strand, within HP15_2561at 2707.793 kb on - strand, within HP15_2561at 2708.008 kb on + strandat 2708.008 kb on + strandat 2708.012 kb on + strandat 2708.016 kb on - strand, within HP15_2562at 2708.022 kb on + strand, within HP15_2562at 2708.067 kb on + strand, within HP15_2562

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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2,705,024 - HP15_2559 0.11 +0.5
2,705,029 - HP15_2559 0.12 -1.5
2,705,034 - HP15_2559 0.12 +0.2
2,705,086 + HP15_2559 0.18 -0.8
2,705,162 + HP15_2559 0.26 +0.4
2,705,306 + HP15_2559 0.42 +1.1
2,705,323 + HP15_2559 0.44 -1.1
2,705,351 + HP15_2559 0.47 -0.8
2,705,390 - HP15_2559 0.52 -0.4
2,705,430 + HP15_2559 0.56 -2.0
2,705,493 + HP15_2559 0.63 -0.5
2,705,512 + HP15_2559 0.65 -1.3
2,705,587 + HP15_2559 0.73 +0.8
2,705,668 - HP15_2559 0.82 -2.8
2,705,778 + -0.2
2,705,786 - -1.3
2,705,931 - -0.6
2,706,059 - +2.0
2,706,085 - +2.3
2,706,127 + HP15_2560 0.12 +1.3
2,706,306 + HP15_2560 0.28 +2.2
2,706,379 - HP15_2560 0.34 +1.6
2,706,419 - HP15_2560 0.38 +2.3
2,706,421 + HP15_2560 0.38 +1.1
2,706,429 - HP15_2560 0.39 +1.2
2,706,502 - HP15_2560 0.45 +2.1
2,706,564 + HP15_2560 0.51 -0.8
2,706,592 + HP15_2560 0.54 +1.6
2,706,607 + HP15_2560 0.55 +2.4
2,706,646 - HP15_2560 0.59 +1.5
2,706,667 - HP15_2560 0.60 +2.2
2,706,720 + HP15_2560 0.65 +2.7
2,706,728 - HP15_2560 0.66 +3.1
2,706,728 - HP15_2560 0.66 +1.8
2,706,738 - HP15_2560 0.67 -0.2
2,706,851 + HP15_2560 0.77 +2.0
2,706,873 - HP15_2560 0.79 +1.9
2,706,986 + HP15_2560 0.89 +2.4
2,707,083 - -1.9
2,707,083 - +0.7
2,707,121 + +0.6
2,707,198 + HP15_2561 0.15 -0.3
2,707,279 + HP15_2561 0.25 -0.3
2,707,356 + HP15_2561 0.35 -1.5
2,707,356 + HP15_2561 0.35 +0.5
2,707,483 + HP15_2561 0.50 +2.1
2,707,483 + HP15_2561 0.50 +0.7
2,707,549 - HP15_2561 0.59 +0.1
2,707,550 - HP15_2561 0.59 +0.4
2,707,598 - HP15_2561 0.65 -0.3
2,707,653 + HP15_2561 0.72 -0.4
2,707,785 + HP15_2561 0.88 -0.3
2,707,793 - HP15_2561 0.89 +0.2
2,707,793 - HP15_2561 0.89 +0.8
2,708,008 + +0.3
2,708,008 + +0.6
2,708,012 + +1.5
2,708,016 - HP15_2562 0.10 +0.5
2,708,022 + HP15_2562 0.11 -0.2
2,708,067 + HP15_2562 0.14 +2.0

Or see this region's nucleotide sequence