Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2381 and HP15_2382 are separated by 73 nucleotides HP15_2382 and HP15_2383 are separated by 74 nucleotides
HP15_2381: HP15_2381 - UDP-glucose 6-dehydrogenase, at 2,509,950 to 2,511,143
_2381
HP15_2382: HP15_2382 - UDP-N-acetylglucosamine 2-epimerase, at 2,511,217 to 2,512,350
_2382
HP15_2383: HP15_2383 - nucleotide sugar epimerase/dehydratase, at 2,512,425 to 2,514,233
_2383
Position (kb)
2511
2512
2513 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2510.287 kb on + strand, within HP15_2381 at 2510.287 kb on + strand, within HP15_2381 at 2510.287 kb on + strand, within HP15_2381 at 2510.295 kb on - strand, within HP15_2381 at 2510.295 kb on - strand, within HP15_2381 at 2510.295 kb on - strand, within HP15_2381 at 2510.295 kb on - strand, within HP15_2381 at 2510.300 kb on + strand, within HP15_2381 at 2510.307 kb on - strand, within HP15_2381 at 2510.366 kb on - strand, within HP15_2381 at 2510.378 kb on + strand, within HP15_2381 at 2510.378 kb on + strand, within HP15_2381 at 2510.445 kb on - strand, within HP15_2381 at 2510.573 kb on + strand, within HP15_2381 at 2510.573 kb on + strand, within HP15_2381 at 2510.581 kb on - strand, within HP15_2381 at 2510.590 kb on + strand, within HP15_2381 at 2510.600 kb on - strand, within HP15_2381 at 2510.665 kb on + strand, within HP15_2381 at 2510.721 kb on - strand, within HP15_2381 at 2510.783 kb on + strand, within HP15_2381 at 2510.826 kb on + strand, within HP15_2381 at 2510.827 kb on - strand, within HP15_2381 at 2510.921 kb on - strand, within HP15_2381 at 2510.976 kb on + strand, within HP15_2381 at 2511.086 kb on - strand at 2511.205 kb on + strand at 2511.213 kb on - strand at 2511.213 kb on - strand at 2511.568 kb on - strand, within HP15_2382 at 2511.583 kb on + strand, within HP15_2382 at 2511.626 kb on - strand, within HP15_2382 at 2511.626 kb on - strand, within HP15_2382 at 2511.629 kb on + strand, within HP15_2382 at 2511.848 kb on - strand, within HP15_2382 at 2512.147 kb on - strand, within HP15_2382 at 2512.151 kb on - strand, within HP15_2382 at 2512.198 kb on + strand, within HP15_2382 at 2512.210 kb on + strand, within HP15_2382 at 2512.218 kb on - strand, within HP15_2382 at 2512.259 kb on - strand at 2512.259 kb on - strand at 2512.305 kb on + strand at 2512.380 kb on - strand at 2512.469 kb on - strand at 2512.623 kb on + strand, within HP15_2383 at 2512.625 kb on + strand, within HP15_2383 at 2512.636 kb on + strand, within HP15_2383 at 2512.668 kb on + strand, within HP15_2383 at 2512.834 kb on + strand, within HP15_2383 at 2512.851 kb on + strand, within HP15_2383 at 2512.853 kb on + strand, within HP15_2383 at 2512.909 kb on - strand, within HP15_2383 at 2512.909 kb on - strand at 2512.909 kb on - strand, within HP15_2383 at 2512.909 kb on - strand, within HP15_2383 at 2512.976 kb on - strand, within HP15_2383 at 2512.999 kb on - strand, within HP15_2383 at 2513.054 kb on + strand, within HP15_2383 at 2513.081 kb on + strand, within HP15_2383 at 2513.112 kb on - strand, within HP15_2383 at 2513.128 kb on + strand, within HP15_2383 at 2513.279 kb on - strand, within HP15_2383 at 2513.327 kb on + strand, within HP15_2383 at 2513.335 kb on - strand, within HP15_2383 at 2513.343 kb on - strand, within HP15_2383
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 2,510,287 + HP15_2381 0.28 -0.6 2,510,287 + HP15_2381 0.28 +1.4 2,510,287 + HP15_2381 0.28 -2.2 2,510,295 - HP15_2381 0.29 +0.9 2,510,295 - HP15_2381 0.29 -0.5 2,510,295 - HP15_2381 0.29 +0.2 2,510,295 - HP15_2381 0.29 -0.8 2,510,300 + HP15_2381 0.29 +0.7 2,510,307 - HP15_2381 0.30 -1.4 2,510,366 - HP15_2381 0.35 -2.5 2,510,378 + HP15_2381 0.36 -0.0 2,510,378 + HP15_2381 0.36 +2.7 2,510,445 - HP15_2381 0.41 -0.8 2,510,573 + HP15_2381 0.52 -0.7 2,510,573 + HP15_2381 0.52 +0.1 2,510,581 - HP15_2381 0.53 -0.1 2,510,590 + HP15_2381 0.54 -0.5 2,510,600 - HP15_2381 0.54 -1.6 2,510,665 + HP15_2381 0.60 -1.1 2,510,721 - HP15_2381 0.65 +0.1 2,510,783 + HP15_2381 0.70 +0.4 2,510,826 + HP15_2381 0.73 -0.4 2,510,827 - HP15_2381 0.73 +0.7 2,510,921 - HP15_2381 0.81 -2.5 2,510,976 + HP15_2381 0.86 -0.3 2,511,086 - -1.5 2,511,205 + -1.0 2,511,213 - -0.8 2,511,213 - -1.8 2,511,568 - HP15_2382 0.31 +1.1 2,511,583 + HP15_2382 0.32 +0.7 2,511,626 - HP15_2382 0.36 -1.2 2,511,626 - HP15_2382 0.36 +0.4 2,511,629 + HP15_2382 0.36 -2.5 2,511,848 - HP15_2382 0.56 -1.6 2,512,147 - HP15_2382 0.82 -0.1 2,512,151 - HP15_2382 0.82 -0.3 2,512,198 + HP15_2382 0.87 -2.9 2,512,210 + HP15_2382 0.88 -0.2 2,512,218 - HP15_2382 0.88 -0.3 2,512,259 - +0.8 2,512,259 - +0.1 2,512,305 + -1.6 2,512,380 - -0.5 2,512,469 - +0.9 2,512,623 + HP15_2383 0.11 -0.9 2,512,625 + HP15_2383 0.11 +1.0 2,512,636 + HP15_2383 0.12 -1.3 2,512,668 + HP15_2383 0.13 -3.3 2,512,834 + HP15_2383 0.23 -1.7 2,512,851 + HP15_2383 0.24 +1.1 2,512,853 + HP15_2383 0.24 +0.8 2,512,909 - HP15_2383 0.27 -0.4 2,512,909 - -0.5 2,512,909 - HP15_2383 0.27 -0.3 2,512,909 - HP15_2383 0.27 -2.0 2,512,976 - HP15_2383 0.30 -0.7 2,512,999 - HP15_2383 0.32 -1.8 2,513,054 + HP15_2383 0.35 +1.7 2,513,081 + HP15_2383 0.36 -2.8 2,513,112 - HP15_2383 0.38 -0.8 2,513,128 + HP15_2383 0.39 -2.7 2,513,279 - HP15_2383 0.47 -0.9 2,513,327 + HP15_2383 0.50 -1.0 2,513,335 - HP15_2383 0.50 -0.6 2,513,343 - HP15_2383 0.51 -0.3
Or see this region's nucleotide sequence