Strain Fitness in Marinobacter adhaerens HP15 around HP15_2382

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2381 and HP15_2382 are separated by 73 nucleotidesHP15_2382 and HP15_2383 are separated by 74 nucleotides HP15_2381: HP15_2381 - UDP-glucose 6-dehydrogenase, at 2,509,950 to 2,511,143 _2381 HP15_2382: HP15_2382 - UDP-N-acetylglucosamine 2-epimerase, at 2,511,217 to 2,512,350 _2382 HP15_2383: HP15_2383 - nucleotide sugar epimerase/dehydratase, at 2,512,425 to 2,514,233 _2383 Position (kb) 2511 2512 2513Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2510.287 kb on + strand, within HP15_2381at 2510.287 kb on + strand, within HP15_2381at 2510.287 kb on + strand, within HP15_2381at 2510.295 kb on - strand, within HP15_2381at 2510.295 kb on - strand, within HP15_2381at 2510.295 kb on - strand, within HP15_2381at 2510.295 kb on - strand, within HP15_2381at 2510.300 kb on + strand, within HP15_2381at 2510.307 kb on - strand, within HP15_2381at 2510.366 kb on - strand, within HP15_2381at 2510.378 kb on + strand, within HP15_2381at 2510.378 kb on + strand, within HP15_2381at 2510.445 kb on - strand, within HP15_2381at 2510.573 kb on + strand, within HP15_2381at 2510.573 kb on + strand, within HP15_2381at 2510.581 kb on - strand, within HP15_2381at 2510.590 kb on + strand, within HP15_2381at 2510.600 kb on - strand, within HP15_2381at 2510.665 kb on + strand, within HP15_2381at 2510.721 kb on - strand, within HP15_2381at 2510.783 kb on + strand, within HP15_2381at 2510.826 kb on + strand, within HP15_2381at 2510.827 kb on - strand, within HP15_2381at 2510.921 kb on - strand, within HP15_2381at 2510.976 kb on + strand, within HP15_2381at 2511.086 kb on - strandat 2511.205 kb on + strandat 2511.213 kb on - strandat 2511.213 kb on - strandat 2511.568 kb on - strand, within HP15_2382at 2511.583 kb on + strand, within HP15_2382at 2511.626 kb on - strand, within HP15_2382at 2511.626 kb on - strand, within HP15_2382at 2511.629 kb on + strand, within HP15_2382at 2511.848 kb on - strand, within HP15_2382at 2512.147 kb on - strand, within HP15_2382at 2512.151 kb on - strand, within HP15_2382at 2512.198 kb on + strand, within HP15_2382at 2512.210 kb on + strand, within HP15_2382at 2512.218 kb on - strand, within HP15_2382at 2512.259 kb on - strandat 2512.259 kb on - strandat 2512.305 kb on + strandat 2512.380 kb on - strandat 2512.469 kb on - strandat 2512.623 kb on + strand, within HP15_2383at 2512.625 kb on + strand, within HP15_2383at 2512.636 kb on + strand, within HP15_2383at 2512.668 kb on + strand, within HP15_2383at 2512.834 kb on + strand, within HP15_2383at 2512.851 kb on + strand, within HP15_2383at 2512.853 kb on + strand, within HP15_2383at 2512.909 kb on - strand, within HP15_2383at 2512.909 kb on - strandat 2512.909 kb on - strand, within HP15_2383at 2512.909 kb on - strand, within HP15_2383at 2512.976 kb on - strand, within HP15_2383at 2512.999 kb on - strand, within HP15_2383at 2513.054 kb on + strand, within HP15_2383at 2513.081 kb on + strand, within HP15_2383at 2513.112 kb on - strand, within HP15_2383at 2513.128 kb on + strand, within HP15_2383at 2513.279 kb on - strand, within HP15_2383at 2513.327 kb on + strand, within HP15_2383at 2513.335 kb on - strand, within HP15_2383at 2513.343 kb on - strand, within HP15_2383

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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2,510,287 + HP15_2381 0.28 -0.6
2,510,287 + HP15_2381 0.28 +1.4
2,510,287 + HP15_2381 0.28 -2.2
2,510,295 - HP15_2381 0.29 +0.9
2,510,295 - HP15_2381 0.29 -0.5
2,510,295 - HP15_2381 0.29 +0.2
2,510,295 - HP15_2381 0.29 -0.8
2,510,300 + HP15_2381 0.29 +0.7
2,510,307 - HP15_2381 0.30 -1.4
2,510,366 - HP15_2381 0.35 -2.5
2,510,378 + HP15_2381 0.36 -0.0
2,510,378 + HP15_2381 0.36 +2.7
2,510,445 - HP15_2381 0.41 -0.8
2,510,573 + HP15_2381 0.52 -0.7
2,510,573 + HP15_2381 0.52 +0.1
2,510,581 - HP15_2381 0.53 -0.1
2,510,590 + HP15_2381 0.54 -0.5
2,510,600 - HP15_2381 0.54 -1.6
2,510,665 + HP15_2381 0.60 -1.1
2,510,721 - HP15_2381 0.65 +0.1
2,510,783 + HP15_2381 0.70 +0.4
2,510,826 + HP15_2381 0.73 -0.4
2,510,827 - HP15_2381 0.73 +0.7
2,510,921 - HP15_2381 0.81 -2.5
2,510,976 + HP15_2381 0.86 -0.3
2,511,086 - -1.5
2,511,205 + -1.0
2,511,213 - -0.8
2,511,213 - -1.8
2,511,568 - HP15_2382 0.31 +1.1
2,511,583 + HP15_2382 0.32 +0.7
2,511,626 - HP15_2382 0.36 -1.2
2,511,626 - HP15_2382 0.36 +0.4
2,511,629 + HP15_2382 0.36 -2.5
2,511,848 - HP15_2382 0.56 -1.6
2,512,147 - HP15_2382 0.82 -0.1
2,512,151 - HP15_2382 0.82 -0.3
2,512,198 + HP15_2382 0.87 -2.9
2,512,210 + HP15_2382 0.88 -0.2
2,512,218 - HP15_2382 0.88 -0.3
2,512,259 - +0.8
2,512,259 - +0.1
2,512,305 + -1.6
2,512,380 - -0.5
2,512,469 - +0.9
2,512,623 + HP15_2383 0.11 -0.9
2,512,625 + HP15_2383 0.11 +1.0
2,512,636 + HP15_2383 0.12 -1.3
2,512,668 + HP15_2383 0.13 -3.3
2,512,834 + HP15_2383 0.23 -1.7
2,512,851 + HP15_2383 0.24 +1.1
2,512,853 + HP15_2383 0.24 +0.8
2,512,909 - HP15_2383 0.27 -0.4
2,512,909 - -0.5
2,512,909 - HP15_2383 0.27 -0.3
2,512,909 - HP15_2383 0.27 -2.0
2,512,976 - HP15_2383 0.30 -0.7
2,512,999 - HP15_2383 0.32 -1.8
2,513,054 + HP15_2383 0.35 +1.7
2,513,081 + HP15_2383 0.36 -2.8
2,513,112 - HP15_2383 0.38 -0.8
2,513,128 + HP15_2383 0.39 -2.7
2,513,279 - HP15_2383 0.47 -0.9
2,513,327 + HP15_2383 0.50 -1.0
2,513,335 - HP15_2383 0.50 -0.6
2,513,343 - HP15_2383 0.51 -0.3

Or see this region's nucleotide sequence