Strain Fitness in Marinobacter adhaerens HP15 around HP15_2046

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2044 and HP15_2045 are separated by 208 nucleotidesHP15_2045 and HP15_2046 are separated by 13 nucleotidesHP15_2046 and HP15_2047 are separated by 17 nucleotides HP15_2044: HP15_2044 - aspartyl-tRNA synthetase, at 2,142,348 to 2,144,156 _2044 HP15_2045: HP15_2045 - DNA-binding transcriptional repressor FabR, at 2,144,365 to 2,144,982 _2045 HP15_2046: HP15_2046 - histidine triad (HIT) protein, at 2,144,996 to 2,145,436 _2046 HP15_2047: HP15_2047 - UDP-glucose 6-dehydrogenase, at 2,145,454 to 2,146,797 _2047 Position (kb) 2144 2145 2146Strain fitness (log2 ratio) -2 -1 0 1 2at 2144.569 kb on + strand, within HP15_2045at 2144.588 kb on - strand, within HP15_2045at 2144.715 kb on + strand, within HP15_2045at 2144.800 kb on + strand, within HP15_2045at 2144.910 kb on + strand, within HP15_2045at 2144.930 kb on - strandat 2144.964 kb on - strandat 2144.989 kb on - strandat 2145.099 kb on + strand, within HP15_2046at 2145.100 kb on + strand, within HP15_2046at 2145.128 kb on - strand, within HP15_2046at 2145.128 kb on - strand, within HP15_2046at 2145.217 kb on - strand, within HP15_2046at 2145.324 kb on - strand, within HP15_2046at 2145.461 kb on + strandat 2145.469 kb on - strandat 2145.469 kb on - strandat 2145.469 kb on - strandat 2145.607 kb on - strand, within HP15_2047at 2145.668 kb on - strand, within HP15_2047at 2145.683 kb on - strand, within HP15_2047at 2145.773 kb on + strand, within HP15_2047at 2145.784 kb on + strand, within HP15_2047at 2145.875 kb on + strand, within HP15_2047at 2146.025 kb on + strand, within HP15_2047at 2146.186 kb on + strand, within HP15_2047at 2146.259 kb on - strand, within HP15_2047at 2146.411 kb on - strand, within HP15_2047

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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2,144,569 + HP15_2045 0.33 -0.5
2,144,588 - HP15_2045 0.36 +0.9
2,144,715 + HP15_2045 0.57 +0.6
2,144,800 + HP15_2045 0.70 +0.8
2,144,910 + HP15_2045 0.88 -0.2
2,144,930 - +2.0
2,144,964 - -0.4
2,144,989 - +0.4
2,145,099 + HP15_2046 0.23 -0.8
2,145,100 + HP15_2046 0.24 -0.5
2,145,128 - HP15_2046 0.30 +0.4
2,145,128 - HP15_2046 0.30 +0.7
2,145,217 - HP15_2046 0.50 -0.4
2,145,324 - HP15_2046 0.74 -0.1
2,145,461 + +2.0
2,145,469 - -0.2
2,145,469 - -1.8
2,145,469 - +0.7
2,145,607 - HP15_2047 0.11 +1.0
2,145,668 - HP15_2047 0.16 +0.7
2,145,683 - HP15_2047 0.17 +0.5
2,145,773 + HP15_2047 0.24 +2.0
2,145,784 + HP15_2047 0.25 +0.8
2,145,875 + HP15_2047 0.31 +1.8
2,146,025 + HP15_2047 0.42 +0.2
2,146,186 + HP15_2047 0.54 +0.9
2,146,259 - HP15_2047 0.60 +0.9
2,146,411 - HP15_2047 0.71 -0.3

Or see this region's nucleotide sequence