Strain Fitness in Marinobacter adhaerens HP15 around HP15_2011

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2010 and HP15_2011 overlap by 1 nucleotidesHP15_2011 and HP15_2012 are separated by 50 nucleotidesHP15_2012 and HP15_2013 overlap by 4 nucleotides HP15_2010: HP15_2010 - sensor histidine kinase, at 2,110,128 to 2,111,972 _2010 HP15_2011: HP15_2011 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,111,972 to 2,113,150 _2011 HP15_2012: HP15_2012 - protein containing helix-turn-helix, Fis-type domain, at 2,113,201 to 2,113,359 _2012 HP15_2013: HP15_2013 - extracellular ligand-binding receptor, at 2,113,356 to 2,114,645 _2013 Position (kb) 2111 2112 2113 2114Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2111.027 kb on + strand, within HP15_2010at 2111.034 kb on + strand, within HP15_2010at 2111.190 kb on + strand, within HP15_2010at 2111.232 kb on - strand, within HP15_2010at 2111.287 kb on + strand, within HP15_2010at 2111.348 kb on + strand, within HP15_2010at 2111.521 kb on - strand, within HP15_2010at 2111.584 kb on + strand, within HP15_2010at 2111.621 kb on + strand, within HP15_2010at 2111.629 kb on + strand, within HP15_2010at 2111.697 kb on - strand, within HP15_2010at 2111.721 kb on + strand, within HP15_2010at 2111.987 kb on - strandat 2112.175 kb on + strand, within HP15_2011at 2112.251 kb on + strand, within HP15_2011at 2112.268 kb on + strand, within HP15_2011at 2112.392 kb on - strand, within HP15_2011at 2112.403 kb on + strand, within HP15_2011at 2112.411 kb on - strand, within HP15_2011at 2112.411 kb on - strand, within HP15_2011at 2112.465 kb on + strand, within HP15_2011at 2112.475 kb on - strand, within HP15_2011at 2112.894 kb on + strand, within HP15_2011at 2112.975 kb on + strand, within HP15_2011at 2113.078 kb on - strandat 2113.332 kb on + strand, within HP15_2012at 2113.443 kb on + strandat 2113.451 kb on + strandat 2113.451 kb on - strandat 2113.504 kb on - strand, within HP15_2013at 2113.563 kb on + strand, within HP15_2013at 2113.625 kb on + strand, within HP15_2013at 2113.712 kb on + strand, within HP15_2013at 2114.030 kb on - strand, within HP15_2013at 2114.067 kb on - strand, within HP15_2013at 2114.149 kb on - strand, within HP15_2013

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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2,111,027 + HP15_2010 0.49 +1.3
2,111,034 + HP15_2010 0.49 +0.1
2,111,190 + HP15_2010 0.58 +0.5
2,111,232 - HP15_2010 0.60 -2.7
2,111,287 + HP15_2010 0.63 +0.3
2,111,348 + HP15_2010 0.66 -0.3
2,111,521 - HP15_2010 0.76 -0.1
2,111,584 + HP15_2010 0.79 -1.7
2,111,621 + HP15_2010 0.81 -0.3
2,111,629 + HP15_2010 0.81 -1.5
2,111,697 - HP15_2010 0.85 +0.3
2,111,721 + HP15_2010 0.86 +0.8
2,111,987 - +0.8
2,112,175 + HP15_2011 0.17 +2.0
2,112,251 + HP15_2011 0.24 +0.7
2,112,268 + HP15_2011 0.25 -3.0
2,112,392 - HP15_2011 0.36 +1.1
2,112,403 + HP15_2011 0.37 -0.8
2,112,411 - HP15_2011 0.37 +3.7
2,112,411 - HP15_2011 0.37 +1.5
2,112,465 + HP15_2011 0.42 -0.7
2,112,475 - HP15_2011 0.43 -0.6
2,112,894 + HP15_2011 0.78 -0.2
2,112,975 + HP15_2011 0.85 +0.2
2,113,078 - +0.1
2,113,332 + HP15_2012 0.82 -2.7
2,113,443 + +0.7
2,113,451 + +0.0
2,113,451 - -1.6
2,113,504 - HP15_2013 0.11 -0.6
2,113,563 + HP15_2013 0.16 -1.4
2,113,625 + HP15_2013 0.21 -0.4
2,113,712 + HP15_2013 0.28 -1.7
2,114,030 - HP15_2013 0.52 +0.6
2,114,067 - HP15_2013 0.55 +0.6
2,114,149 - HP15_2013 0.61 -0.7

Or see this region's nucleotide sequence