Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2010 and HP15_2011 overlap by 1 nucleotides HP15_2011 and HP15_2012 are separated by 50 nucleotides HP15_2012 and HP15_2013 overlap by 4 nucleotides
HP15_2010: HP15_2010 - sensor histidine kinase, at 2,110,128 to 2,111,972
_2010
HP15_2011: HP15_2011 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,111,972 to 2,113,150
_2011
HP15_2012: HP15_2012 - protein containing helix-turn-helix, Fis-type domain, at 2,113,201 to 2,113,359
_2012
HP15_2013: HP15_2013 - extracellular ligand-binding receptor, at 2,113,356 to 2,114,645
_2013
Position (kb)
2111
2112
2113
2114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2111.027 kb on + strand, within HP15_2010 at 2111.034 kb on + strand, within HP15_2010 at 2111.190 kb on + strand, within HP15_2010 at 2111.232 kb on - strand, within HP15_2010 at 2111.287 kb on + strand, within HP15_2010 at 2111.348 kb on + strand, within HP15_2010 at 2111.521 kb on - strand, within HP15_2010 at 2111.584 kb on + strand, within HP15_2010 at 2111.621 kb on + strand, within HP15_2010 at 2111.629 kb on + strand, within HP15_2010 at 2111.697 kb on - strand, within HP15_2010 at 2111.721 kb on + strand, within HP15_2010 at 2111.987 kb on - strand at 2112.175 kb on + strand, within HP15_2011 at 2112.251 kb on + strand, within HP15_2011 at 2112.268 kb on + strand, within HP15_2011 at 2112.392 kb on - strand, within HP15_2011 at 2112.403 kb on + strand, within HP15_2011 at 2112.411 kb on - strand, within HP15_2011 at 2112.411 kb on - strand, within HP15_2011 at 2112.465 kb on + strand, within HP15_2011 at 2112.475 kb on - strand, within HP15_2011 at 2112.894 kb on + strand, within HP15_2011 at 2112.975 kb on + strand, within HP15_2011 at 2113.078 kb on - strand at 2113.332 kb on + strand, within HP15_2012 at 2113.443 kb on + strand at 2113.451 kb on + strand at 2113.451 kb on - strand at 2113.504 kb on - strand, within HP15_2013 at 2113.563 kb on + strand, within HP15_2013 at 2113.625 kb on + strand, within HP15_2013 at 2113.712 kb on + strand, within HP15_2013 at 2114.030 kb on - strand, within HP15_2013 at 2114.067 kb on - strand, within HP15_2013 at 2114.149 kb on - strand, within HP15_2013
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 2,111,027 + HP15_2010 0.49 +1.3 2,111,034 + HP15_2010 0.49 +0.1 2,111,190 + HP15_2010 0.58 +0.5 2,111,232 - HP15_2010 0.60 -2.7 2,111,287 + HP15_2010 0.63 +0.3 2,111,348 + HP15_2010 0.66 -0.3 2,111,521 - HP15_2010 0.76 -0.1 2,111,584 + HP15_2010 0.79 -1.7 2,111,621 + HP15_2010 0.81 -0.3 2,111,629 + HP15_2010 0.81 -1.5 2,111,697 - HP15_2010 0.85 +0.3 2,111,721 + HP15_2010 0.86 +0.8 2,111,987 - +0.8 2,112,175 + HP15_2011 0.17 +2.0 2,112,251 + HP15_2011 0.24 +0.7 2,112,268 + HP15_2011 0.25 -3.0 2,112,392 - HP15_2011 0.36 +1.1 2,112,403 + HP15_2011 0.37 -0.8 2,112,411 - HP15_2011 0.37 +3.7 2,112,411 - HP15_2011 0.37 +1.5 2,112,465 + HP15_2011 0.42 -0.7 2,112,475 - HP15_2011 0.43 -0.6 2,112,894 + HP15_2011 0.78 -0.2 2,112,975 + HP15_2011 0.85 +0.2 2,113,078 - +0.1 2,113,332 + HP15_2012 0.82 -2.7 2,113,443 + +0.7 2,113,451 + +0.0 2,113,451 - -1.6 2,113,504 - HP15_2013 0.11 -0.6 2,113,563 + HP15_2013 0.16 -1.4 2,113,625 + HP15_2013 0.21 -0.4 2,113,712 + HP15_2013 0.28 -1.7 2,114,030 - HP15_2013 0.52 +0.6 2,114,067 - HP15_2013 0.55 +0.6 2,114,149 - HP15_2013 0.61 -0.7
Or see this region's nucleotide sequence