Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1864 and HP15_1865 are separated by 194 nucleotides HP15_1865 and HP15_1866 are separated by 47 nucleotides
HP15_1864: HP15_1864 - acyl-CoA synthase, at 1,969,999 to 1,971,681
_1864
HP15_1865: HP15_1865 - MaoC domain protein dehydratase, at 1,971,876 to 1,972,361
_1865
HP15_1866: HP15_1866 - conserved hypothetical protein, at 1,972,409 to 1,973,308
_1866
Position (kb)
1971
1972
1973 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1970.925 kb on - strand, within HP15_1864 at 1970.997 kb on - strand, within HP15_1864 at 1971.352 kb on - strand, within HP15_1864 at 1971.370 kb on + strand, within HP15_1864 at 1971.378 kb on - strand, within HP15_1864 at 1971.437 kb on + strand, within HP15_1864 at 1971.460 kb on - strand, within HP15_1864 at 1971.610 kb on + strand at 1971.824 kb on - strand at 1971.852 kb on + strand at 1971.854 kb on + strand at 1971.880 kb on + strand at 1971.890 kb on + strand at 1971.955 kb on + strand, within HP15_1865 at 1971.955 kb on + strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.980 kb on + strand, within HP15_1865 at 1972.076 kb on - strand, within HP15_1865 at 1972.140 kb on + strand, within HP15_1865 at 1972.143 kb on - strand, within HP15_1865 at 1972.520 kb on + strand, within HP15_1866 at 1972.590 kb on + strand, within HP15_1866 at 1972.711 kb on - strand, within HP15_1866 at 1972.775 kb on - strand, within HP15_1866 at 1972.865 kb on - strand, within HP15_1866 at 1972.926 kb on + strand, within HP15_1866 at 1973.112 kb on - strand, within HP15_1866 at 1973.215 kb on + strand, within HP15_1866 at 1973.289 kb on + strand at 1973.347 kb on + strand at 1973.347 kb on + strand at 1973.347 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 1,970,925 - HP15_1864 0.55 -1.9 1,970,997 - HP15_1864 0.59 -1.0 1,971,352 - HP15_1864 0.80 -0.7 1,971,370 + HP15_1864 0.81 -0.1 1,971,378 - HP15_1864 0.82 +0.0 1,971,437 + HP15_1864 0.85 -1.1 1,971,460 - HP15_1864 0.87 -2.7 1,971,610 + -1.8 1,971,824 - -3.3 1,971,852 + +0.9 1,971,854 + +1.5 1,971,880 + +0.4 1,971,890 + -0.8 1,971,955 + HP15_1865 0.16 +0.7 1,971,955 + HP15_1865 0.16 +0.2 1,971,963 - HP15_1865 0.18 +0.0 1,971,963 - HP15_1865 0.18 +0.2 1,971,963 - HP15_1865 0.18 +0.9 1,971,963 - HP15_1865 0.18 +1.2 1,971,980 + HP15_1865 0.21 +0.7 1,972,076 - HP15_1865 0.41 -1.1 1,972,140 + HP15_1865 0.54 -2.4 1,972,143 - HP15_1865 0.55 +0.5 1,972,520 + HP15_1866 0.12 +0.1 1,972,590 + HP15_1866 0.20 +1.1 1,972,711 - HP15_1866 0.34 +0.9 1,972,775 - HP15_1866 0.41 +2.3 1,972,865 - HP15_1866 0.51 -1.1 1,972,926 + HP15_1866 0.57 +0.3 1,973,112 - HP15_1866 0.78 +0.4 1,973,215 + HP15_1866 0.90 +0.5 1,973,289 + +1.4 1,973,347 + -1.0 1,973,347 + +0.7 1,973,347 + -0.4
Or see this region's nucleotide sequence