Strain Fitness in Marinobacter adhaerens HP15 around HP15_1865

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1864 and HP15_1865 are separated by 194 nucleotidesHP15_1865 and HP15_1866 are separated by 47 nucleotides HP15_1864: HP15_1864 - acyl-CoA synthase, at 1,969,999 to 1,971,681 _1864 HP15_1865: HP15_1865 - MaoC domain protein dehydratase, at 1,971,876 to 1,972,361 _1865 HP15_1866: HP15_1866 - conserved hypothetical protein, at 1,972,409 to 1,973,308 _1866 Position (kb) 1971 1972 1973Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1970.925 kb on - strand, within HP15_1864at 1970.997 kb on - strand, within HP15_1864at 1971.352 kb on - strand, within HP15_1864at 1971.370 kb on + strand, within HP15_1864at 1971.378 kb on - strand, within HP15_1864at 1971.437 kb on + strand, within HP15_1864at 1971.460 kb on - strand, within HP15_1864at 1971.610 kb on + strandat 1971.824 kb on - strandat 1971.852 kb on + strandat 1971.854 kb on + strandat 1971.880 kb on + strandat 1971.890 kb on + strandat 1971.955 kb on + strand, within HP15_1865at 1971.955 kb on + strand, within HP15_1865at 1971.963 kb on - strand, within HP15_1865at 1971.963 kb on - strand, within HP15_1865at 1971.963 kb on - strand, within HP15_1865at 1971.963 kb on - strand, within HP15_1865at 1971.980 kb on + strand, within HP15_1865at 1972.076 kb on - strand, within HP15_1865at 1972.140 kb on + strand, within HP15_1865at 1972.143 kb on - strand, within HP15_1865at 1972.520 kb on + strand, within HP15_1866at 1972.590 kb on + strand, within HP15_1866at 1972.711 kb on - strand, within HP15_1866at 1972.775 kb on - strand, within HP15_1866at 1972.865 kb on - strand, within HP15_1866at 1972.926 kb on + strand, within HP15_1866at 1973.112 kb on - strand, within HP15_1866at 1973.215 kb on + strand, within HP15_1866at 1973.289 kb on + strandat 1973.347 kb on + strandat 1973.347 kb on + strandat 1973.347 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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1,970,925 - HP15_1864 0.55 -1.9
1,970,997 - HP15_1864 0.59 -1.0
1,971,352 - HP15_1864 0.80 -0.7
1,971,370 + HP15_1864 0.81 -0.1
1,971,378 - HP15_1864 0.82 +0.0
1,971,437 + HP15_1864 0.85 -1.1
1,971,460 - HP15_1864 0.87 -2.7
1,971,610 + -1.8
1,971,824 - -3.3
1,971,852 + +0.9
1,971,854 + +1.5
1,971,880 + +0.4
1,971,890 + -0.8
1,971,955 + HP15_1865 0.16 +0.7
1,971,955 + HP15_1865 0.16 +0.2
1,971,963 - HP15_1865 0.18 +0.0
1,971,963 - HP15_1865 0.18 +0.2
1,971,963 - HP15_1865 0.18 +0.9
1,971,963 - HP15_1865 0.18 +1.2
1,971,980 + HP15_1865 0.21 +0.7
1,972,076 - HP15_1865 0.41 -1.1
1,972,140 + HP15_1865 0.54 -2.4
1,972,143 - HP15_1865 0.55 +0.5
1,972,520 + HP15_1866 0.12 +0.1
1,972,590 + HP15_1866 0.20 +1.1
1,972,711 - HP15_1866 0.34 +0.9
1,972,775 - HP15_1866 0.41 +2.3
1,972,865 - HP15_1866 0.51 -1.1
1,972,926 + HP15_1866 0.57 +0.3
1,973,112 - HP15_1866 0.78 +0.4
1,973,215 + HP15_1866 0.90 +0.5
1,973,289 + +1.4
1,973,347 + -1.0
1,973,347 + +0.7
1,973,347 + -0.4

Or see this region's nucleotide sequence