Strain Fitness in Marinobacter adhaerens HP15 around HP15_1837

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1835 and HP15_1836 are separated by 3 nucleotidesHP15_1836 and HP15_1837 overlap by 1 nucleotidesHP15_1837 and HP15_1838 are separated by 143 nucleotides HP15_1835: HP15_1835 - transcriptional regulator LysR family protein, at 1,935,204 to 1,936,154 _1835 HP15_1836: HP15_1836 - major facilitator superfamily MFS_1, at 1,936,158 to 1,936,697 _1836 HP15_1837: HP15_1837 - major facilitator superfamily MFS_1, at 1,936,697 to 1,937,320 _1837 HP15_1838: HP15_1838 - chorismate synthase, at 1,937,464 to 1,938,558 _1838 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -3 -2 -1 0 1at 1935.841 kb on + strand, within HP15_1835at 1935.892 kb on - strand, within HP15_1835at 1935.979 kb on + strand, within HP15_1835at 1935.989 kb on + strand, within HP15_1835at 1935.997 kb on - strand, within HP15_1835at 1935.997 kb on - strand, within HP15_1835at 1935.997 kb on - strand, within HP15_1835at 1936.100 kb on + strandat 1936.126 kb on + strandat 1936.167 kb on + strandat 1936.173 kb on + strandat 1936.255 kb on + strand, within HP15_1836at 1936.255 kb on + strand, within HP15_1836at 1936.263 kb on - strand, within HP15_1836at 1936.329 kb on + strand, within HP15_1836at 1936.340 kb on + strand, within HP15_1836at 1936.380 kb on + strand, within HP15_1836at 1936.627 kb on - strand, within HP15_1836at 1936.908 kb on - strand, within HP15_1837at 1937.102 kb on - strand, within HP15_1837at 1937.132 kb on + strand, within HP15_1837

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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1,935,841 + HP15_1835 0.67 -2.1
1,935,892 - HP15_1835 0.72 +0.4
1,935,979 + HP15_1835 0.81 -0.9
1,935,989 + HP15_1835 0.83 -0.3
1,935,997 - HP15_1835 0.83 +0.8
1,935,997 - HP15_1835 0.83 +0.0
1,935,997 - HP15_1835 0.83 +0.6
1,936,100 + +0.7
1,936,126 + +0.2
1,936,167 + -2.0
1,936,173 + +0.3
1,936,255 + HP15_1836 0.18 -1.2
1,936,255 + HP15_1836 0.18 -2.1
1,936,263 - HP15_1836 0.19 +0.9
1,936,329 + HP15_1836 0.32 -0.1
1,936,340 + HP15_1836 0.34 +0.9
1,936,380 + HP15_1836 0.41 +0.5
1,936,627 - HP15_1836 0.87 -0.4
1,936,908 - HP15_1837 0.34 -2.7
1,937,102 - HP15_1837 0.65 -0.2
1,937,132 + HP15_1837 0.70 -3.0

Or see this region's nucleotide sequence