Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1402 and HP15_1403 are separated by 93 nucleotides
HP15_1402: HP15_1402 - conserved hypothetical protein, at 1,481,288 to 1,483,480
_1402
HP15_1403: HP15_1403 - aspartate racemase, at 1,483,574 to 1,484,269
_1403
Position (kb)
1481
1482
1483
1484 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1480.383 kb on - strand at 1480.428 kb on - strand at 1480.493 kb on + strand at 1480.496 kb on - strand at 1480.546 kb on - strand at 1480.547 kb on + strand at 1480.548 kb on + strand at 1480.625 kb on - strand at 1480.910 kb on - strand at 1481.094 kb on - strand at 1481.190 kb on - strand at 1481.233 kb on + strand at 1481.238 kb on + strand at 1481.238 kb on + strand at 1481.429 kb on + strand at 1481.429 kb on + strand at 1481.502 kb on - strand at 1481.543 kb on + strand, within HP15_1402 at 1481.564 kb on + strand, within HP15_1402 at 1481.658 kb on - strand, within HP15_1402 at 1481.794 kb on + strand, within HP15_1402 at 1481.806 kb on - strand, within HP15_1402 at 1481.866 kb on + strand, within HP15_1402 at 1481.945 kb on - strand, within HP15_1402 at 1481.950 kb on - strand, within HP15_1402 at 1482.267 kb on - strand, within HP15_1402 at 1482.478 kb on + strand, within HP15_1402 at 1482.478 kb on + strand, within HP15_1402 at 1482.492 kb on + strand, within HP15_1402 at 1482.572 kb on + strand, within HP15_1402 at 1482.658 kb on + strand, within HP15_1402 at 1482.672 kb on - strand, within HP15_1402 at 1482.692 kb on - strand, within HP15_1402 at 1482.706 kb on + strand, within HP15_1402 at 1482.744 kb on + strand, within HP15_1402 at 1482.768 kb on + strand, within HP15_1402 at 1482.828 kb on + strand, within HP15_1402 at 1482.834 kb on - strand, within HP15_1402 at 1482.834 kb on - strand, within HP15_1402 at 1482.917 kb on - strand, within HP15_1402 at 1482.917 kb on - strand, within HP15_1402 at 1483.031 kb on + strand, within HP15_1402 at 1483.098 kb on + strand, within HP15_1402 at 1483.155 kb on + strand, within HP15_1402 at 1483.212 kb on - strand, within HP15_1402 at 1483.215 kb on + strand, within HP15_1402 at 1483.259 kb on + strand, within HP15_1402 at 1483.334 kb on - strand at 1483.334 kb on - strand at 1483.336 kb on + strand at 1483.344 kb on - strand at 1483.497 kb on - strand at 1483.601 kb on + strand at 1483.758 kb on + strand, within HP15_1403 at 1483.817 kb on + strand, within HP15_1403 at 1484.051 kb on + strand, within HP15_1403 at 1484.171 kb on - strand, within HP15_1403 at 1484.254 kb on + strand at 1484.283 kb on + strand at 1484.301 kb on + strand at 1484.309 kb on - strand at 1484.311 kb on + strand at 1484.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 1,480,383 - -0.6 1,480,428 - +0.3 1,480,493 + -2.1 1,480,496 - +0.5 1,480,546 - -1.4 1,480,547 + +3.8 1,480,548 + +0.8 1,480,625 - -0.0 1,480,910 - -0.2 1,481,094 - +0.2 1,481,190 - -1.2 1,481,233 + +0.9 1,481,238 + +0.4 1,481,238 + +1.2 1,481,429 + -1.1 1,481,429 + -0.6 1,481,502 - -2.4 1,481,543 + HP15_1402 0.12 +0.2 1,481,564 + HP15_1402 0.13 -0.2 1,481,658 - HP15_1402 0.17 +0.1 1,481,794 + HP15_1402 0.23 -0.4 1,481,806 - HP15_1402 0.24 -0.5 1,481,866 + HP15_1402 0.26 -0.5 1,481,945 - HP15_1402 0.30 +2.6 1,481,950 - HP15_1402 0.30 -2.3 1,482,267 - HP15_1402 0.45 -0.2 1,482,478 + HP15_1402 0.54 +0.1 1,482,478 + HP15_1402 0.54 -0.2 1,482,492 + HP15_1402 0.55 +0.8 1,482,572 + HP15_1402 0.59 -0.4 1,482,658 + HP15_1402 0.62 +0.5 1,482,672 - HP15_1402 0.63 -1.9 1,482,692 - HP15_1402 0.64 +0.7 1,482,706 + HP15_1402 0.65 +0.5 1,482,744 + HP15_1402 0.66 -0.4 1,482,768 + HP15_1402 0.67 -1.1 1,482,828 + HP15_1402 0.70 -1.2 1,482,834 - HP15_1402 0.70 -1.5 1,482,834 - HP15_1402 0.70 +0.6 1,482,917 - HP15_1402 0.74 -0.3 1,482,917 - HP15_1402 0.74 -0.9 1,483,031 + HP15_1402 0.79 -1.5 1,483,098 + HP15_1402 0.83 -0.6 1,483,155 + HP15_1402 0.85 -1.4 1,483,212 - HP15_1402 0.88 -1.6 1,483,215 + HP15_1402 0.88 +0.3 1,483,259 + HP15_1402 0.90 +0.3 1,483,334 - -0.5 1,483,334 - -1.4 1,483,336 + -0.1 1,483,344 - -1.4 1,483,497 - -1.5 1,483,601 + -1.2 1,483,758 + HP15_1403 0.26 +0.1 1,483,817 + HP15_1403 0.35 +2.0 1,484,051 + HP15_1403 0.69 -0.7 1,484,171 - HP15_1403 0.86 +0.3 1,484,254 + -0.4 1,484,283 + +0.5 1,484,301 + +0.8 1,484,309 - -2.0 1,484,311 + -1.0 1,484,319 - -1.0
Or see this region's nucleotide sequence