Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1305 and HP15_1306 are separated by 223 nucleotides HP15_1306 and HP15_1307 are separated by 69 nucleotides HP15_1307 and HP15_1308 are separated by 0 nucleotides
HP15_1305: HP15_1305 - nicotinate-nucleotide pyrophosphorylase, at 1,364,329 to 1,365,168
_1305
HP15_1306: HP15_1306 - protein containing DUF1631, at 1,365,392 to 1,367,689
_1306
HP15_1307: HP15_1307 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 1,367,759 to 1,368,385
_1307
HP15_1308: HP15_1308 - signaling modulator of AmpD, AmpE, at 1,368,386 to 1,368,901
_1308
Position (kb)
1365
1366
1367
1368 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1365.194 kb on - strand at 1365.246 kb on + strand at 1365.248 kb on - strand at 1365.278 kb on + strand at 1365.375 kb on - strand at 1365.395 kb on - strand at 1365.483 kb on + strand at 1365.488 kb on + strand at 1365.534 kb on + strand at 1365.552 kb on - strand at 1365.652 kb on - strand, within HP15_1306 at 1365.710 kb on - strand, within HP15_1306 at 1365.864 kb on + strand, within HP15_1306 at 1365.923 kb on + strand, within HP15_1306 at 1365.923 kb on + strand, within HP15_1306 at 1365.928 kb on + strand, within HP15_1306 at 1365.933 kb on + strand, within HP15_1306 at 1366.083 kb on + strand, within HP15_1306 at 1366.136 kb on - strand, within HP15_1306 at 1366.248 kb on - strand, within HP15_1306 at 1366.353 kb on + strand, within HP15_1306 at 1366.418 kb on - strand, within HP15_1306 at 1366.424 kb on - strand, within HP15_1306 at 1366.958 kb on - strand, within HP15_1306 at 1367.003 kb on - strand, within HP15_1306 at 1367.025 kb on - strand, within HP15_1306 at 1367.025 kb on - strand, within HP15_1306 at 1367.063 kb on + strand, within HP15_1306 at 1367.073 kb on + strand, within HP15_1306 at 1367.078 kb on + strand, within HP15_1306 at 1367.212 kb on - strand, within HP15_1306 at 1367.233 kb on - strand, within HP15_1306 at 1367.291 kb on - strand, within HP15_1306 at 1367.334 kb on + strand, within HP15_1306 at 1367.436 kb on + strand, within HP15_1306 at 1367.632 kb on - strand at 1367.702 kb on - strand at 1368.347 kb on + strand at 1368.438 kb on + strand, within HP15_1308 at 1368.463 kb on + strand, within HP15_1308 at 1368.471 kb on - strand, within HP15_1308 at 1368.504 kb on - strand, within HP15_1308
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM remove 1,365,194 - -0.9 1,365,246 + +0.7 1,365,248 - +0.1 1,365,278 + +1.4 1,365,375 - +1.1 1,365,395 - -0.9 1,365,483 + +0.7 1,365,488 + -2.5 1,365,534 + -2.7 1,365,552 - -0.0 1,365,652 - HP15_1306 0.11 -0.3 1,365,710 - HP15_1306 0.14 -0.0 1,365,864 + HP15_1306 0.21 -1.8 1,365,923 + HP15_1306 0.23 +0.0 1,365,923 + HP15_1306 0.23 -0.8 1,365,928 + HP15_1306 0.23 +0.6 1,365,933 + HP15_1306 0.24 +1.3 1,366,083 + HP15_1306 0.30 -0.7 1,366,136 - HP15_1306 0.32 -0.3 1,366,248 - HP15_1306 0.37 +0.2 1,366,353 + HP15_1306 0.42 +0.3 1,366,418 - HP15_1306 0.45 +0.0 1,366,424 - HP15_1306 0.45 +0.1 1,366,958 - HP15_1306 0.68 +0.0 1,367,003 - HP15_1306 0.70 -3.9 1,367,025 - HP15_1306 0.71 +0.9 1,367,025 - HP15_1306 0.71 -0.7 1,367,063 + HP15_1306 0.73 +0.1 1,367,073 + HP15_1306 0.73 -0.4 1,367,078 + HP15_1306 0.73 -3.6 1,367,212 - HP15_1306 0.79 +0.4 1,367,233 - HP15_1306 0.80 -0.4 1,367,291 - HP15_1306 0.83 +1.5 1,367,334 + HP15_1306 0.85 -0.2 1,367,436 + HP15_1306 0.89 -0.4 1,367,632 - +0.3 1,367,702 - -0.8 1,368,347 + +0.7 1,368,438 + HP15_1308 0.10 +0.1 1,368,463 + HP15_1308 0.15 -0.4 1,368,471 - HP15_1308 0.16 -0.8 1,368,504 - HP15_1308 0.23 -1.2
Or see this region's nucleotide sequence