Strain Fitness in Marinobacter adhaerens HP15 around HP15_1293

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1292 and HP15_1293 are separated by 159 nucleotidesHP15_1293 and HP15_1294 are separated by 280 nucleotidesHP15_1294 and HP15_1295 overlap by 4 nucleotides HP15_1292: HP15_1292 - methionyl-tRNA synthetase, at 1,351,679 to 1,353,709 _1292 HP15_1293: HP15_1293 - iron sulfur binding protein, at 1,353,869 to 1,355,008 _1293 HP15_1294: HP15_1294 - deoxycytidine triphosphate deaminase, at 1,355,289 to 1,355,855 _1294 HP15_1295: HP15_1295 - protein containing DUF416, at 1,355,852 to 1,356,451 _1295 Position (kb) 1353 1354 1355 1356Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1353.980 kb on - strandat 1354.019 kb on - strand, within HP15_1293at 1354.059 kb on + strand, within HP15_1293at 1354.059 kb on - strand, within HP15_1293at 1354.228 kb on + strand, within HP15_1293at 1354.228 kb on + strand, within HP15_1293at 1354.270 kb on + strand, within HP15_1293at 1354.421 kb on - strand, within HP15_1293at 1354.479 kb on + strand, within HP15_1293at 1354.487 kb on - strand, within HP15_1293at 1354.487 kb on - strand, within HP15_1293at 1354.591 kb on + strand, within HP15_1293at 1354.632 kb on + strand, within HP15_1293at 1354.781 kb on + strand, within HP15_1293at 1354.817 kb on - strand, within HP15_1293at 1354.886 kb on + strand, within HP15_1293at 1354.941 kb on - strandat 1354.946 kb on - strandat 1354.946 kb on - strandat 1354.967 kb on - strandat 1355.062 kb on - strandat 1355.062 kb on - strandat 1355.094 kb on - strandat 1355.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 15 mM
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1,353,980 - -2.1
1,354,019 - HP15_1293 0.13 +0.6
1,354,059 + HP15_1293 0.17 +0.1
1,354,059 - HP15_1293 0.17 +0.9
1,354,228 + HP15_1293 0.31 -1.6
1,354,228 + HP15_1293 0.31 +1.2
1,354,270 + HP15_1293 0.35 -2.8
1,354,421 - HP15_1293 0.48 +2.2
1,354,479 + HP15_1293 0.54 -0.4
1,354,487 - HP15_1293 0.54 +0.9
1,354,487 - HP15_1293 0.54 +2.7
1,354,591 + HP15_1293 0.63 +1.5
1,354,632 + HP15_1293 0.67 -0.4
1,354,781 + HP15_1293 0.80 +0.5
1,354,817 - HP15_1293 0.83 +0.9
1,354,886 + HP15_1293 0.89 -0.0
1,354,941 - +2.4
1,354,946 - -3.8
1,354,946 - +0.5
1,354,967 - +1.7
1,355,062 - +0.9
1,355,062 - +0.7
1,355,094 - -0.1
1,355,115 - +0.6

Or see this region's nucleotide sequence