Strain Fitness in Shewanella amazonensis SB2B around Sama_2368

Experiment: benzoic 0.29 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	benzoic 0.29 mg/ml
2,844,303	-				-0.3
2,844,303	-				-2.3
2,844,303	-				-0.7
2,844,333	-		Sama_2367	0.12	-0.6
2,844,441	-		Sama_2367	0.26	+0.3
2,844,441	-		Sama_2367	0.26	-1.3
2,844,494	-		Sama_2367	0.33	+0.9
2,844,494	-		Sama_2367	0.33	-0.4
2,844,494	-		Sama_2367	0.33	+1.5
2,844,531	+		Sama_2367	0.37	-0.7
2,844,532	-		Sama_2367	0.37	+0.3
2,844,532	-		Sama_2367	0.37	-0.2
2,844,572	-		Sama_2367	0.42	+0.0
2,844,592	+		Sama_2367	0.45	-0.7
2,844,592	+		Sama_2367	0.45	-0.1
2,844,592	+		Sama_2367	0.45	+0.3
2,844,593	-		Sama_2367	0.45	-0.3
2,844,605	+		Sama_2367	0.47	-0.7
2,844,615	+		Sama_2367	0.48	-0.9
2,844,616	-		Sama_2367	0.48	-1.0
2,844,674	+		Sama_2367	0.55	+0.5
2,844,675	-		Sama_2367	0.56	-1.3
2,844,675	-		Sama_2367	0.56	+0.2
2,844,680	+		Sama_2367	0.56	-0.2
2,844,680	+		Sama_2367	0.56	+0.9
2,844,680	+		Sama_2367	0.56	+0.6
2,844,680	+		Sama_2367	0.56	-0.9
2,844,681	-		Sama_2367	0.56	-0.2
2,844,681	-		Sama_2367	0.56	+0.3
2,844,681	-		Sama_2367	0.56	-2.3
2,844,722	-		Sama_2367	0.61	+1.2
2,844,750	+		Sama_2367	0.65	-1.0
2,844,751	-		Sama_2367	0.65	+0.7
2,844,751	-		Sama_2367	0.65	+0.3
2,844,751	-		Sama_2367	0.65	-0.3
2,844,761	-		Sama_2367	0.66	+0.3
2,844,761	-		Sama_2367	0.66	+0.4
2,844,767	-		Sama_2367	0.67	-0.2
2,844,767	-		Sama_2367	0.67	+0.0
2,844,819	-		Sama_2367	0.74	-1.1
2,844,845	+		Sama_2367	0.77	+0.3
2,844,846	-		Sama_2367	0.77	-0.3
2,844,862	+		Sama_2367	0.79	-1.0
2,844,862	+		Sama_2367	0.79	-0.1
2,844,862	+		Sama_2367	0.79	-0.1
2,844,862	+		Sama_2367	0.79	-0.2
2,844,863	-		Sama_2367	0.79	-0.5
2,844,863	-		Sama_2367	0.79	-0.3
2,844,863	-		Sama_2367	0.79	+0.3
2,844,932	+		Sama_2367	0.88	+0.9
2,844,932	+		Sama_2367	0.88	+2.7
2,844,933	-		Sama_2367	0.88	+0.3
2,844,933	-		Sama_2367	0.88	-0.7
2,844,933	-		Sama_2367	0.88	+0.2
2,844,933	-		Sama_2367	0.88	-0.7
2,844,939	-		Sama_2367	0.89	-0.6
2,844,939	-		Sama_2367	0.89	+0.7
2,844,946	+		Sama_2367	0.90	-1.4
2,844,947	-				+0.0
2,844,947	-				+0.7
2,845,003	-				+0.3
2,845,035	+				+0.2
2,845,036	-				-0.5
2,845,039	-				+0.6
2,845,060	-				+0.0
2,845,180	+		Sama_2368	0.11	-0.3
2,845,181	-		Sama_2368	0.11	-0.6
2,845,181	-		Sama_2368	0.11	+0.2
2,845,187	+		Sama_2368	0.11	+0.6
2,845,187	+		Sama_2368	0.11	+0.3
2,845,188	-		Sama_2368	0.12	-0.3
2,845,188	-		Sama_2368	0.12	-0.3
2,845,188	-		Sama_2368	0.12	-1.1
2,845,188	-		Sama_2368	0.12	-1.9
2,845,190	+		Sama_2368	0.12	-0.8
2,845,191	-		Sama_2368	0.12	+0.3
2,845,273	-		Sama_2368	0.19	-0.3
2,845,310	-		Sama_2368	0.22	-1.9
2,845,377	+		Sama_2368	0.28	-1.8
2,845,378	-		Sama_2368	0.29	-0.5
2,845,422	+		Sama_2368	0.32	-1.0
2,845,490	-		Sama_2368	0.39	-0.1
2,845,580	-		Sama_2368	0.47	-0.4
2,845,630	+		Sama_2368	0.51	+0.3
2,845,631	-		Sama_2368	0.51	+0.9
2,845,633	+		Sama_2368	0.51	-0.3
2,845,633	+		Sama_2368	0.51	-0.0
2,845,634	-		Sama_2368	0.51	-0.1
2,845,634	-		Sama_2368	0.51	-1.0
2,845,634	-		Sama_2368	0.51	-1.3
2,845,634	-		Sama_2368	0.51	+0.3
2,845,634	-		Sama_2368	0.51	-1.1
2,845,634	-		Sama_2368	0.51	+1.9
2,845,634	-		Sama_2368	0.51	-1.1
2,845,634	-		Sama_2368	0.51	+0.5
2,845,634	-		Sama_2368	0.51	-2.0
2,845,778	+		Sama_2368	0.64	+0.2
2,845,779	-		Sama_2368	0.64	+0.3
2,845,790	-		Sama_2368	0.65	-0.7
2,845,825	+		Sama_2368	0.68	+0.5
2,845,826	-		Sama_2368	0.68	-0.4
2,845,856	+		Sama_2368	0.71	-0.5
2,845,856	+		Sama_2368	0.71	+0.7
2,845,857	-		Sama_2368	0.71	-0.5
2,845,857	-		Sama_2368	0.71	-0.4
2,845,857	-		Sama_2368	0.71	+0.4
2,845,857	-		Sama_2368	0.71	-2.1
2,845,890	+		Sama_2368	0.74	-1.1
2,845,890	+		Sama_2368	0.74	+0.9
2,845,890	+		Sama_2368	0.74	-0.8
2,845,891	-		Sama_2368	0.74	-1.0
2,845,891	-		Sama_2368	0.74	-0.8
2,845,891	-		Sama_2368	0.74	-1.9
2,845,891	-		Sama_2368	0.74	-0.1
2,845,891	-		Sama_2368	0.74	-0.9
2,845,891	-		Sama_2368	0.74	-1.3
2,845,891	-		Sama_2368	0.74	-1.7
2,845,891	-		Sama_2368	0.74	-1.0
2,845,891	-		Sama_2368	0.74	-0.3
2,845,919	+		Sama_2368	0.77	+0.2
2,845,925	-		Sama_2368	0.77	-0.8
2,845,937	-		Sama_2368	0.78	-2.1
2,845,937	-		Sama_2368	0.78	-0.1
2,845,940	-		Sama_2368	0.79	-1.4
2,846,024	-		Sama_2368	0.86	-0.8
2,846,026	+		Sama_2368	0.86	+0.1
2,846,027	-		Sama_2368	0.86	-1.4
2,846,027	-		Sama_2368	0.86	-0.7
2,846,067	+				-0.9
2,846,068	-				-1.0
2,846,082	-				+0.3
2,846,082	-				-0.1
2,846,201	-				-0.9
2,846,226	-				+0.6
2,846,227	+				-0.7
2,846,268	+				+1.5
2,846,268	+				-0.1
2,846,268	+				+1.0
2,846,269	-				-0.6
2,846,269	-				-0.4
2,846,269	-				-0.1
2,846,269	-				-1.1
2,846,269	-				-0.3
2,846,273	+				+1.0
2,846,273	+				+0.9
2,846,273	+				-1.7
2,846,274	-				-1.6
2,846,274	-				-0.0
2,846,274	-				+0.2
2,846,274	-				+0.5
2,846,274	-				+0.5
2,846,274	-				-1.7
2,846,301	-				-0.1
2,846,301	-				+0.2
2,846,305	+				+0.2
2,846,305	+				+0.7
2,846,305	+				+1.0
2,846,305	+				+1.2
2,846,306	-				+0.9
2,846,306	-				-0.0
2,846,306	-				+0.4
2,846,314	-				-0.7
2,846,314	-				+0.4
2,846,318	+				+1.5
2,846,326	+				+0.1
2,846,326	+				-0.3
2,846,326	+				-0.1
2,846,326	+				+0.5
2,846,327	-				+0.9
2,846,327	-				-1.6
2,846,327	-				+1.3
2,846,341	+				+0.9
2,846,341	+				+0.1
2,846,342	-				-0.5
2,846,342	-				-0.3
2,846,342	-				+0.7
2,846,342	-				-0.3
2,846,342	-				+0.3
2,846,344	+				-1.3
2,846,345	-				-0.5
2,846,345	-				-0.2
2,846,345	-				+1.2
2,846,349	+				-0.6
2,846,349	+				+0.2
2,846,349	+				-0.7
2,846,350	-				-0.0
2,846,420	+				-0.1
2,846,420	+				+0.6
2,846,420	+				-0.3
2,846,421	-				+0.1
2,846,421	-				+0.7
2,846,421	-				+0.0
2,846,421	-				+0.5
2,846,421	-				+0.3
2,846,422	+				-0.7
2,846,423	-				-0.4
2,846,443	+		Sama_2369	0.11	-0.3
2,846,444	-		Sama_2369	0.11	-0.3
2,846,517	+		Sama_2369	0.18	+0.4
2,846,518	-		Sama_2369	0.18	-1.4
2,846,518	-		Sama_2369	0.18	+0.5
2,846,522	-		Sama_2369	0.18	+1.5
2,846,522	-		Sama_2369	0.18	+0.7
2,846,522	-		Sama_2369	0.18	+0.6
2,846,538	+		Sama_2369	0.20	-1.9
2,846,539	-		Sama_2369	0.20	+0.1
2,846,539	-		Sama_2369	0.20	+1.3
2,846,574	+		Sama_2369	0.23	-0.3
2,846,575	-		Sama_2369	0.23	+0.5
2,846,575	-		Sama_2369	0.23	+0.0
2,846,575	-		Sama_2369	0.23	+0.6
2,846,575	-		Sama_2369	0.23	+0.1
2,846,614	+		Sama_2369	0.27	+0.3
2,846,614	+		Sama_2369	0.27	+0.5
2,846,614	+		Sama_2369	0.27	-0.4
2,846,614	+		Sama_2369	0.27	+1.5
2,846,614	+		Sama_2369	0.27	+0.1
2,846,614	+		Sama_2369	0.27	+0.6
2,846,620	+		Sama_2369	0.27	-2.3
2,846,620	+		Sama_2369	0.27	+0.4
2,846,620	+		Sama_2369	0.27	+0.1
2,846,621	-		Sama_2369	0.27	+1.3
2,846,623	+		Sama_2369	0.28	+0.5
2,846,624	-		Sama_2369	0.28	-0.1
2,846,624	-		Sama_2369	0.28	-0.5
2,846,669	+		Sama_2369	0.32	+1.7
2,846,669	+		Sama_2369	0.32	+0.3
2,846,737	+		Sama_2369	0.38	-0.9
2,846,738	-		Sama_2369	0.38	-0.3
2,846,792	+		Sama_2369	0.43	+0.7
2,846,792	+		Sama_2369	0.43	+1.4
2,846,793	-		Sama_2369	0.44	+0.2
2,846,793	-		Sama_2369	0.44	-1.0
2,846,793	-		Sama_2369	0.44	-0.3
2,846,793	-		Sama_2369	0.44	-0.1
2,846,793	-		Sama_2369	0.44	+0.2
2,846,793	-		Sama_2369	0.44	-1.1
2,846,983	+		Sama_2369	0.61	+0.1
2,846,983	+		Sama_2369	0.61	+0.4
2,847,025	+		Sama_2369	0.65	+0.6
2,847,025	+		Sama_2369	0.65	+0.3
2,847,025	+		Sama_2369	0.65	+0.7
2,847,048	+		Sama_2369	0.67	+0.3
2,847,049	-		Sama_2369	0.67	-0.4
2,847,056	-		Sama_2369	0.68	-1.3
2,847,056	-		Sama_2369	0.68	+3.7
2,847,062	-		Sama_2369	0.69	-0.4
2,847,062	-		Sama_2369	0.69	-1.1
2,847,082	+		Sama_2369	0.70	+0.5
2,847,082	+		Sama_2369	0.70	-0.1
2,847,082	+		Sama_2369	0.70	-0.2