Strain Fitness in Shewanella amazonensis SB2B around Sama_1945

Experiment: benzoic 0.29 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	benzoic 0.29 mg/ml
2,372,402	+		Sama_1944	0.14	-0.4
2,372,403	-		Sama_1944	0.14	-0.1
2,372,403	-		Sama_1944	0.14	-0.6
2,372,403	-		Sama_1944	0.14	-0.6
2,372,403	-		Sama_1944	0.14	+0.9
2,372,504	+		Sama_1944	0.24	-1.8
2,372,687	+		Sama_1944	0.41	-0.0
2,372,687	+		Sama_1944	0.41	-0.6
2,372,687	+		Sama_1944	0.41	+1.1
2,372,687	+		Sama_1944	0.41	-0.2
2,372,687	+		Sama_1944	0.41	+0.6
2,372,687	+		Sama_1944	0.41	+0.9
2,372,687	+		Sama_1944	0.41	-2.3
2,372,688	-		Sama_1944	0.41	-1.4
2,372,691	+		Sama_1944	0.41	+1.5
2,372,789	+		Sama_1944	0.50	-0.5
2,372,790	-		Sama_1944	0.51	-2.1
2,372,858	+		Sama_1944	0.57	+0.1
2,372,858	+		Sama_1944	0.57	+0.7
2,372,858	+		Sama_1944	0.57	-0.4
2,372,858	+		Sama_1944	0.57	-0.3
2,372,858	+		Sama_1944	0.57	+0.1
2,372,858	+		Sama_1944	0.57	+0.5
2,372,859	-		Sama_1944	0.57	-0.9
2,372,859	-		Sama_1944	0.57	+1.2
2,372,859	-		Sama_1944	0.57	-1.4
2,372,859	-		Sama_1944	0.57	-0.1
2,372,859	-		Sama_1944	0.57	-0.2
2,372,859	-		Sama_1944	0.57	+0.5
2,372,903	+		Sama_1944	0.61	-0.0
2,372,904	-		Sama_1944	0.61	-0.3
2,373,036	+		Sama_1944	0.74	-0.5
2,373,065	+		Sama_1944	0.76	-0.1
2,373,084	-		Sama_1944	0.78	+0.1
2,373,187	+		Sama_1944	0.88	+1.1
2,373,187	+		Sama_1944	0.88	-0.3
2,373,188	-		Sama_1944	0.88	-1.1
2,373,188	-		Sama_1944	0.88	-1.1
2,373,226	+				-1.4
2,373,226	+				-0.3
2,373,226	+				-1.3
2,373,226	+				+0.4
2,373,227	-				+0.6
2,373,227	-				-2.1
2,373,259	+				+1.1
2,373,400	-	hisH	Sama_1945	0.12	+0.1
2,373,400	-	hisH	Sama_1945	0.12	-0.7
2,373,550	+	hisH	Sama_1945	0.33	-0.9
2,373,551	-	hisH	Sama_1945	0.33	+0.5
2,373,649	+	hisH	Sama_1945	0.46	-1.2
2,373,664	+	hisH	Sama_1945	0.49	-1.4
2,373,665	-	hisH	Sama_1945	0.49	-0.8
2,373,668	-	hisH	Sama_1945	0.49	+0.1
2,373,757	-	hisH	Sama_1945	0.62	-0.4
2,373,788	+	hisH	Sama_1945	0.66	+0.1
2,373,789	-	hisH	Sama_1945	0.66	-0.9
2,374,050	+				-0.8
2,374,087	+				+0.0
2,374,138	+		Sama_1946	0.15	-0.7
2,374,139	-		Sama_1946	0.15	-0.7
2,374,189	-		Sama_1946	0.22	+0.7
2,374,217	+		Sama_1946	0.26	-1.3
2,374,358	+		Sama_1946	0.45	-1.1
2,374,358	+		Sama_1946	0.45	-1.0
2,374,361	+		Sama_1946	0.45	+0.6
2,374,361	+		Sama_1946	0.45	+0.5
2,374,362	-		Sama_1946	0.45	-1.3
2,374,362	-		Sama_1946	0.45	+1.0
2,374,378	-		Sama_1946	0.48	-0.2
2,374,378	-		Sama_1946	0.48	+1.3
2,374,378	-		Sama_1946	0.48	-0.3
2,374,381	+		Sama_1946	0.48	-1.3
2,374,381	+		Sama_1946	0.48	-1.6
2,374,382	-		Sama_1946	0.48	+0.6
2,374,419	+		Sama_1946	0.53	-0.3
2,374,420	-		Sama_1946	0.53	-0.9
2,374,421	+		Sama_1946	0.53	-1.1
2,374,421	+		Sama_1946	0.53	-0.1
2,374,421	+		Sama_1946	0.53	-0.6
2,374,421	+		Sama_1946	0.53	+0.1
2,374,421	+		Sama_1946	0.53	+0.2
2,374,421	+		Sama_1946	0.53	+0.7
2,374,421	+		Sama_1946	0.53	+0.5
2,374,421	+		Sama_1946	0.53	-0.7
2,374,422	-		Sama_1946	0.54	+0.3
2,374,500	+		Sama_1946	0.64	-0.3
2,374,501	-		Sama_1946	0.64	-0.5
2,374,506	+		Sama_1946	0.65	+0.9
2,374,506	+		Sama_1946	0.65	-0.1
2,374,507	-		Sama_1946	0.65	-1.6
2,374,522	-		Sama_1946	0.67	-0.7
2,374,575	+		Sama_1946	0.74	+1.0
2,374,576	-		Sama_1946	0.74	+0.2
2,374,585	+		Sama_1946	0.76	-1.6
2,374,616	+		Sama_1946	0.80	-0.6
2,374,616	+		Sama_1946	0.80	-0.5
2,374,617	-		Sama_1946	0.80	+0.4
2,374,617	-		Sama_1946	0.80	+2.0
2,374,690	-		Sama_1946	0.90	-0.4
2,374,702	-				-1.0
2,374,760	+				-0.9
2,374,760	+				+0.7
2,374,762	+				-0.0
2,374,762	+				+0.1
2,374,762	+				+0.3
2,374,763	-				+0.3
2,374,840	+		Sama_1947	0.12	-0.5
2,374,860	+		Sama_1947	0.15	-1.1
2,374,893	+		Sama_1947	0.19	-0.5
2,374,893	+		Sama_1947	0.19	+1.2
2,374,893	+		Sama_1947	0.19	+0.5
2,374,894	-		Sama_1947	0.19	+1.1
2,374,924	+		Sama_1947	0.23	+0.7
2,374,932	-		Sama_1947	0.24	+1.0
2,374,995	-		Sama_1947	0.32	+1.0
2,374,995	-		Sama_1947	0.32	+0.5