Experiment: benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1269 and Sama_1270 are separated by 115 nucleotides Sama_1270 and Sama_1271 are separated by 346 nucleotides Sama_1271 and Sama_1272 overlap by 4 nucleotides
Sama_1269: Sama_1269 - M24/M37 family peptidase (RefSeq), at 1,557,503 to 1,558,762
_1269
Sama_1270: Sama_1270 - hypothetical protein (RefSeq), at 1,558,878 to 1,559,306
_1270
Sama_1271: Sama_1271 - hypothetical protein (RefSeq), at 1,559,653 to 1,560,150
_1271
Sama_1272: Sama_1272 - hypothetical protein (RefSeq), at 1,560,147 to 1,560,584
_1272
Position (kb)
1558
1559
1560 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1558.256 kb on + strand, within Sama_1269 at 1558.767 kb on + strand at 1558.789 kb on + strand at 1558.802 kb on + strand at 1558.803 kb on - strand at 1558.890 kb on - strand at 1558.905 kb on - strand at 1559.026 kb on - strand, within Sama_1270 at 1559.026 kb on - strand, within Sama_1270 at 1559.082 kb on - strand, within Sama_1270 at 1559.136 kb on - strand, within Sama_1270 at 1559.136 kb on - strand, within Sama_1270 at 1559.154 kb on - strand, within Sama_1270 at 1559.199 kb on + strand, within Sama_1270 at 1559.199 kb on + strand, within Sama_1270 at 1559.200 kb on - strand, within Sama_1270 at 1559.200 kb on - strand, within Sama_1270 at 1559.267 kb on + strand at 1559.267 kb on + strand at 1559.267 kb on + strand at 1559.268 kb on - strand at 1559.391 kb on + strand at 1559.391 kb on + strand at 1559.392 kb on - strand at 1559.392 kb on - strand at 1559.451 kb on + strand at 1559.452 kb on - strand at 1559.484 kb on - strand at 1559.503 kb on + strand at 1559.538 kb on + strand at 1559.538 kb on + strand at 1559.578 kb on + strand at 1559.579 kb on - strand at 1559.654 kb on + strand at 1559.655 kb on - strand at 1559.692 kb on + strand at 1559.720 kb on + strand, within Sama_1271 at 1559.721 kb on - strand, within Sama_1271 at 1559.721 kb on - strand, within Sama_1271 at 1559.733 kb on + strand, within Sama_1271 at 1559.734 kb on - strand, within Sama_1271 at 1559.734 kb on - strand, within Sama_1271 at 1559.734 kb on - strand, within Sama_1271 at 1559.779 kb on + strand, within Sama_1271 at 1559.780 kb on - strand, within Sama_1271 at 1559.808 kb on + strand, within Sama_1271 at 1559.809 kb on - strand, within Sama_1271 at 1559.841 kb on + strand, within Sama_1271 at 1559.842 kb on - strand, within Sama_1271 at 1559.877 kb on + strand, within Sama_1271 at 1559.877 kb on + strand, within Sama_1271 at 1559.904 kb on + strand, within Sama_1271 at 1560.140 kb on + strand at 1560.141 kb on - strand at 1560.141 kb on - strand at 1560.141 kb on - strand at 1560.141 kb on - strand at 1560.184 kb on + strand at 1560.235 kb on + strand, within Sama_1272 at 1560.236 kb on - strand, within Sama_1272 at 1560.236 kb on - strand, within Sama_1272 at 1560.241 kb on - strand, within Sama_1272
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml remove 1,558,256 + Sama_1269 0.60 -1.5 1,558,767 + -0.5 1,558,789 + -0.2 1,558,802 + +1.5 1,558,803 - +0.3 1,558,890 - +0.0 1,558,905 - -0.2 1,559,026 - Sama_1270 0.34 +0.2 1,559,026 - Sama_1270 0.34 -1.5 1,559,082 - Sama_1270 0.48 -0.5 1,559,136 - Sama_1270 0.60 -0.2 1,559,136 - Sama_1270 0.60 -1.5 1,559,154 - Sama_1270 0.64 -0.7 1,559,199 + Sama_1270 0.75 -1.7 1,559,199 + Sama_1270 0.75 -0.2 1,559,200 - Sama_1270 0.75 -0.7 1,559,200 - Sama_1270 0.75 +0.1 1,559,267 + +0.3 1,559,267 + -1.7 1,559,267 + +0.1 1,559,268 - +0.1 1,559,391 + +1.4 1,559,391 + -1.7 1,559,392 - +1.0 1,559,392 - -0.3 1,559,451 + +0.8 1,559,452 - -0.5 1,559,484 - +0.0 1,559,503 + -0.2 1,559,538 + -0.7 1,559,538 + -0.5 1,559,578 + +0.1 1,559,579 - +0.0 1,559,654 + -0.4 1,559,655 - -1.3 1,559,692 + -0.2 1,559,720 + Sama_1271 0.13 -1.7 1,559,721 - Sama_1271 0.14 +0.8 1,559,721 - Sama_1271 0.14 -0.1 1,559,733 + Sama_1271 0.16 +0.7 1,559,734 - Sama_1271 0.16 -2.2 1,559,734 - Sama_1271 0.16 +0.1 1,559,734 - Sama_1271 0.16 +0.0 1,559,779 + Sama_1271 0.25 +0.3 1,559,780 - Sama_1271 0.26 +0.5 1,559,808 + Sama_1271 0.31 -0.4 1,559,809 - Sama_1271 0.31 +0.8 1,559,841 + Sama_1271 0.38 -1.3 1,559,842 - Sama_1271 0.38 +0.6 1,559,877 + Sama_1271 0.45 +0.7 1,559,877 + Sama_1271 0.45 +2.2 1,559,904 + Sama_1271 0.50 +0.5 1,560,140 + -0.4 1,560,141 - +0.1 1,560,141 - +0.4 1,560,141 - -1.3 1,560,141 - +1.2 1,560,184 + +0.8 1,560,235 + Sama_1272 0.20 +2.1 1,560,236 - Sama_1272 0.20 +1.1 1,560,236 - Sama_1272 0.20 +0.8 1,560,241 - Sama_1272 0.21 +0.3
Or see this region's nucleotide sequence