Strain Fitness in Shewanella amazonensis SB2B around Sama_1123

Experiment: benzoic 0.29 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	benzoic 0.29 mg/ml
1,373,173	-		Sama_1121	0.86	+0.0
1,373,173	-		Sama_1121	0.86	+0.3
1,373,198	-				+0.6
1,373,227	+				+0.8
1,373,293	+				+2.5
1,373,293	+				-1.7
1,373,307	-				-0.4
1,373,307	-				-1.1
1,373,343	+				-2.5
1,373,343	+				-0.7
1,373,344	-				+1.1
1,373,350	+				+0.1
1,373,350	+				+0.6
1,373,350	+				+1.7
1,373,350	+				-0.4
1,373,350	+				-0.2
1,373,350	+				-0.5
1,373,350	+				-0.9
1,373,350	+				+0.6
1,373,350	+				-0.6
1,373,351	-				-0.1
1,373,351	-				+0.1
1,373,351	-				-0.7
1,373,351	-				-1.6
1,373,351	-				+0.6
1,373,364	-				-0.9
1,373,520	-		Sama_1122	0.20	-0.2
1,373,525	+		Sama_1122	0.21	+1.2
1,373,525	+		Sama_1122	0.21	-2.5
1,373,525	+		Sama_1122	0.21	+0.3
1,373,525	+		Sama_1122	0.21	+0.3
1,373,525	+		Sama_1122	0.21	-1.1
1,373,525	+		Sama_1122	0.21	-0.1
1,373,526	-		Sama_1122	0.21	+0.5
1,373,526	-		Sama_1122	0.21	+0.9
1,373,526	-		Sama_1122	0.21	+0.9
1,373,528	+		Sama_1122	0.21	-0.1
1,373,529	-		Sama_1122	0.22	-0.2
1,373,531	+		Sama_1122	0.22	-1.1
1,373,531	+		Sama_1122	0.22	+0.7
1,373,531	+		Sama_1122	0.22	+0.3
1,373,531	+		Sama_1122	0.22	+0.4
1,373,531	+		Sama_1122	0.22	+0.3
1,373,531	+		Sama_1122	0.22	+0.2
1,373,531	+		Sama_1122	0.22	-0.1
1,373,531	+		Sama_1122	0.22	+1.3
1,373,532	-		Sama_1122	0.22	+0.2
1,373,532	-		Sama_1122	0.22	-0.4
1,373,532	-		Sama_1122	0.22	-0.2
1,373,532	-		Sama_1122	0.22	+1.2
1,373,532	-		Sama_1122	0.22	+0.2
1,373,532	-		Sama_1122	0.22	+0.4
1,373,532	-		Sama_1122	0.22	+0.3
1,373,532	-		Sama_1122	0.22	+0.4
1,373,532	-		Sama_1122	0.22	-0.1
1,373,553	-		Sama_1122	0.25	+0.6
1,373,553	-		Sama_1122	0.25	+0.7
1,373,607	+		Sama_1122	0.32	+1.2
1,373,607	+		Sama_1122	0.32	+0.1
1,373,608	-		Sama_1122	0.32	+0.7
1,373,608	-		Sama_1122	0.32	+0.2
1,373,643	+		Sama_1122	0.36	+0.1
1,373,706	+		Sama_1122	0.44	-1.0
1,373,706	+		Sama_1122	0.44	+0.4
1,373,707	-		Sama_1122	0.45	+1.1
1,373,707	-		Sama_1122	0.45	+0.9
1,373,719	-		Sama_1122	0.46	-1.5
1,373,738	+		Sama_1122	0.49	+0.4
1,373,738	+		Sama_1122	0.49	+0.1
1,373,739	-		Sama_1122	0.49	+0.7
1,373,739	-		Sama_1122	0.49	-0.4
1,373,739	-		Sama_1122	0.49	+1.2
1,373,795	+		Sama_1122	0.56	+0.5
1,373,795	+		Sama_1122	0.56	-0.1
1,373,795	+		Sama_1122	0.56	+0.4
1,373,795	+		Sama_1122	0.56	+0.2
1,373,795	+		Sama_1122	0.56	-0.6
1,373,795	+		Sama_1122	0.56	-0.5
1,373,795	+		Sama_1122	0.56	-0.8
1,373,795	+		Sama_1122	0.56	+0.2
1,373,795	+		Sama_1122	0.56	-0.3
1,373,795	+		Sama_1122	0.56	+1.5
1,373,795	+		Sama_1122	0.56	+0.3
1,373,795	+		Sama_1122	0.56	-0.7
1,373,796	-		Sama_1122	0.56	-1.0
1,373,796	-		Sama_1122	0.56	-0.1
1,373,796	-		Sama_1122	0.56	-1.6
1,373,796	-		Sama_1122	0.56	+0.1
1,373,796	-		Sama_1122	0.56	-0.2
1,373,796	-		Sama_1122	0.56	-0.2
1,373,796	-		Sama_1122	0.56	+0.5
1,373,796	-		Sama_1122	0.56	+0.5
1,373,887	+		Sama_1122	0.68	-0.5
1,373,887	+		Sama_1122	0.68	+0.5
1,373,887	+		Sama_1122	0.68	-1.1
1,373,887	+		Sama_1122	0.68	-0.6
1,373,888	-		Sama_1122	0.68	-0.6
1,373,911	+		Sama_1122	0.71	-0.1
1,373,911	+		Sama_1122	0.71	+1.2
1,373,911	+		Sama_1122	0.71	-0.2
1,373,912	-		Sama_1122	0.71	-0.3
1,373,955	+		Sama_1122	0.77	+0.7
1,373,956	-		Sama_1122	0.77	+0.0
1,373,985	+		Sama_1122	0.80	-2.2
1,374,163	-				+0.2
1,374,173	+		Sama_1123	0.12	+2.3
1,374,173	+		Sama_1123	0.12	+0.9
1,374,179	+		Sama_1123	0.14	-1.3
1,374,204	+		Sama_1123	0.22	-1.1
1,374,278	+		Sama_1123	0.46	-1.4
1,374,278	+		Sama_1123	0.46	-0.1
1,374,279	-		Sama_1123	0.47	-0.7
1,374,327	+		Sama_1123	0.62	-0.4
1,374,339	-		Sama_1123	0.66	-1.0
1,374,339	-		Sama_1123	0.66	+0.4
1,374,403	+		Sama_1123	0.87	-0.2
1,374,443	+				-0.1
1,374,443	+				+0.7
1,374,443	+				-0.9
1,374,443	+				-1.1
1,374,444	-				-0.1
1,374,444	-				-1.3
1,374,444	-				+0.5
1,374,508	-				-0.1
1,374,574	+				-0.9
1,374,574	+				+1.1
1,374,575	-				-0.4
1,374,575	-				+1.1
1,374,600	+				-0.1
1,374,600	+				+1.3
1,374,601	-				+0.6
1,374,705	-		Sama_1124	0.33	-0.7
1,374,719	-		Sama_1124	0.37	-0.1
1,374,845	-		Sama_1124	0.72	-1.7
1,374,886	+		Sama_1124	0.83	+0.3
1,374,889	+		Sama_1124	0.84	+0.0
1,374,890	-		Sama_1124	0.85	+0.8
1,374,890	-		Sama_1124	0.85	+0.0
1,374,890	-		Sama_1124	0.85	+0.5
1,374,890	-		Sama_1124	0.85	-0.7
1,374,947	+				+0.3
1,374,947	+				+0.3
1,374,947	+				+1.9
1,374,947	+				-0.4
1,374,948	-				-0.2
1,374,948	-				-0.6
1,374,948	-				-0.1
1,374,952	-				-0.7
1,374,952	-				-0.3
1,374,952	-				-0.8
1,374,952	-				+0.5
1,374,955	+				-0.6
1,375,018	+		Sama_1125	0.31	+0.2
1,375,078	+		Sama_1125	0.57	-1.8
1,375,078	+		Sama_1125	0.57	-1.1
1,375,078	+		Sama_1125	0.57	-0.5
1,375,078	+		Sama_1125	0.57	-0.1
1,375,078	+		Sama_1125	0.57	+0.6
1,375,078	+		Sama_1125	0.57	+0.2
1,375,078	+		Sama_1125	0.57	-0.4
1,375,078	+		Sama_1125	0.57	-1.1
1,375,078	+		Sama_1125	0.57	-0.6
1,375,078	+		Sama_1125	0.57	-0.3
1,375,078	+		Sama_1125	0.57	-1.3
1,375,078	+		Sama_1125	0.57	+1.3
1,375,078	+		Sama_1125	0.57	-0.8
1,375,079	-		Sama_1125	0.58	+0.0
1,375,079	-		Sama_1125	0.58	-0.7
1,375,079	-		Sama_1125	0.58	-0.2
1,375,079	-		Sama_1125	0.58	+0.1
1,375,079	-		Sama_1125	0.58	+0.3
1,375,079	-		Sama_1125	0.58	-0.1
1,375,079	-		Sama_1125	0.58	+0.5
1,375,079	-		Sama_1125	0.58	+0.3
1,375,079	-		Sama_1125	0.58	-0.4
1,375,079	-		Sama_1125	0.58	-0.7
1,375,079	-		Sama_1125	0.58	-1.3
1,375,079	-		Sama_1125	0.58	+0.9
1,375,080	+		Sama_1125	0.58	-0.4
1,375,080	+		Sama_1125	0.58	-1.1
1,375,080	+		Sama_1125	0.58	-0.4
1,375,080	+		Sama_1125	0.58	-0.4
1,375,080	+		Sama_1125	0.58	-0.2
1,375,081	-		Sama_1125	0.58	+0.2
1,375,081	-		Sama_1125	0.58	+0.4
1,375,081	-		Sama_1125	0.58	-1.1
1,375,083	+		Sama_1125	0.59	+1.2
1,375,083	+		Sama_1125	0.59	+0.2
1,375,083	+		Sama_1125	0.59	-0.1
1,375,083	+		Sama_1125	0.59	+1.1
1,375,083	+		Sama_1125	0.59	+1.5
1,375,084	-		Sama_1125	0.60	+0.1
1,375,113	+		Sama_1125	0.72	-1.1
1,375,113	+		Sama_1125	0.72	+0.4
1,375,113	+		Sama_1125	0.72	-0.1
1,375,113	+		Sama_1125	0.72	-0.1
1,375,113	+		Sama_1125	0.72	+0.6
1,375,114	-		Sama_1125	0.73	-0.5
1,375,145	-		Sama_1125	0.86	-0.3
1,375,170	+				+0.8
1,375,170	+				+0.9
1,375,171	-				+0.2
1,375,171	-				-1.2
1,375,176	+				-1.5
1,375,176	+				+0.9
1,375,176	+				+0.8
1,375,176	+				+0.9
1,375,177	-				+0.2
1,375,177	-				+0.3
1,375,177	-				+0.4
1,375,208	-				+0.1
1,375,245	+				+0.8
1,375,246	-				+0.8
1,375,270	+				+0.2
1,375,270	+				-0.6
1,375,270	+				+0.9
1,375,270	+				+0.4
1,375,270	+				+0.6
1,375,270	+				-0.9
1,375,270	+				-0.7
1,375,270	+				-0.8
1,375,270	+				-0.7
1,375,270	+				-0.7
1,375,270	+				-0.5
1,375,270	+				-0.9
1,375,270	+				-0.9
1,375,271	-				-0.8
1,375,271	-				-0.2
1,375,271	-				-1.4
1,375,271	-				+0.0
1,375,271	-				-0.2
1,375,271	-				+0.6
1,375,271	-				+1.5
1,375,325	+				-1.4
1,375,326	-				-0.2
1,375,326	-				-0.5
1,375,347	+				+0.6
1,375,347	+				-0.1
1,375,348	-				-1.2
1,375,389	+		Sama_1126	0.12	+0.0
1,375,389	+		Sama_1126	0.12	-0.2
1,375,392	-		Sama_1126	0.13	-0.6