Experiment: benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1121 and Sama_1122 are separated by 100 nucleotides Sama_1122 and Sama_1123 overlap by 1 nucleotides Sama_1123 and Sama_1124 are separated by 144 nucleotides Sama_1124 and Sama_1125 are separated by 1 nucleotides Sama_1125 and Sama_1126 are separated by 134 nucleotides
Sama_1121: Sama_1121 - SecY interacting protein Syd (RefSeq), at 1,372,614 to 1,373,261
_1121
Sama_1122: Sama_1122 - hypothetical protein (RefSeq), at 1,373,362 to 1,374,135
_1122
Sama_1123: Sama_1123 - hypothetical protein (RefSeq), at 1,374,135 to 1,374,443
_1123
Sama_1124: Sama_1124 - hypothetical protein (RefSeq), at 1,374,588 to 1,374,944
_1124
Sama_1125: Sama_1125 - hypothetical protein (RefSeq), at 1,374,946 to 1,375,176
_1125
Sama_1126: Sama_1126 - acetyltransferase (RefSeq), at 1,375,311 to 1,375,952
_1126
Position (kb)
1374
1375 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1373.173 kb on - strand, within Sama_1121 at 1373.173 kb on - strand, within Sama_1121 at 1373.198 kb on - strand at 1373.227 kb on + strand at 1373.293 kb on + strand at 1373.293 kb on + strand at 1373.307 kb on - strand at 1373.307 kb on - strand at 1373.343 kb on + strand at 1373.343 kb on + strand at 1373.344 kb on - strand at 1373.350 kb on + strand at 1373.350 kb on + strand at 1373.350 kb on + strand at 1373.350 kb on + strand at 1373.350 kb on + strand at 1373.350 kb on + strand at 1373.350 kb on + strand at 1373.350 kb on + strand at 1373.350 kb on + strand at 1373.351 kb on - strand at 1373.351 kb on - strand at 1373.351 kb on - strand at 1373.351 kb on - strand at 1373.351 kb on - strand at 1373.364 kb on - strand at 1373.520 kb on - strand, within Sama_1122 at 1373.525 kb on + strand, within Sama_1122 at 1373.525 kb on + strand, within Sama_1122 at 1373.525 kb on + strand, within Sama_1122 at 1373.525 kb on + strand, within Sama_1122 at 1373.525 kb on + strand, within Sama_1122 at 1373.525 kb on + strand, within Sama_1122 at 1373.526 kb on - strand, within Sama_1122 at 1373.526 kb on - strand, within Sama_1122 at 1373.526 kb on - strand, within Sama_1122 at 1373.528 kb on + strand, within Sama_1122 at 1373.529 kb on - strand, within Sama_1122 at 1373.531 kb on + strand, within Sama_1122 at 1373.531 kb on + strand, within Sama_1122 at 1373.531 kb on + strand, within Sama_1122 at 1373.531 kb on + strand, within Sama_1122 at 1373.531 kb on + strand, within Sama_1122 at 1373.531 kb on + strand, within Sama_1122 at 1373.531 kb on + strand, within Sama_1122 at 1373.531 kb on + strand, within Sama_1122 at 1373.532 kb on - strand, within Sama_1122 at 1373.532 kb on - strand, within Sama_1122 at 1373.532 kb on - strand, within Sama_1122 at 1373.532 kb on - strand, within Sama_1122 at 1373.532 kb on - strand, within Sama_1122 at 1373.532 kb on - strand, within Sama_1122 at 1373.532 kb on - strand, within Sama_1122 at 1373.532 kb on - strand, within Sama_1122 at 1373.532 kb on - strand, within Sama_1122 at 1373.553 kb on - strand, within Sama_1122 at 1373.553 kb on - strand, within Sama_1122 at 1373.607 kb on + strand, within Sama_1122 at 1373.607 kb on + strand, within Sama_1122 at 1373.608 kb on - strand, within Sama_1122 at 1373.608 kb on - strand, within Sama_1122 at 1373.643 kb on + strand, within Sama_1122 at 1373.706 kb on + strand, within Sama_1122 at 1373.706 kb on + strand, within Sama_1122 at 1373.707 kb on - strand, within Sama_1122 at 1373.707 kb on - strand, within Sama_1122 at 1373.719 kb on - strand, within Sama_1122 at 1373.738 kb on + strand, within Sama_1122 at 1373.738 kb on + strand, within Sama_1122 at 1373.739 kb on - strand, within Sama_1122 at 1373.739 kb on - strand, within Sama_1122 at 1373.739 kb on - strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.795 kb on + strand, within Sama_1122 at 1373.796 kb on - strand, within Sama_1122 at 1373.796 kb on - strand, within Sama_1122 at 1373.796 kb on - strand, within Sama_1122 at 1373.796 kb on - strand, within Sama_1122 at 1373.796 kb on - strand, within Sama_1122 at 1373.796 kb on - strand, within Sama_1122 at 1373.796 kb on - strand, within Sama_1122 at 1373.796 kb on - strand, within Sama_1122 at 1373.887 kb on + strand, within Sama_1122 at 1373.887 kb on + strand, within Sama_1122 at 1373.887 kb on + strand, within Sama_1122 at 1373.887 kb on + strand, within Sama_1122 at 1373.888 kb on - strand, within Sama_1122 at 1373.911 kb on + strand, within Sama_1122 at 1373.911 kb on + strand, within Sama_1122 at 1373.911 kb on + strand, within Sama_1122 at 1373.912 kb on - strand, within Sama_1122 at 1373.955 kb on + strand, within Sama_1122 at 1373.956 kb on - strand, within Sama_1122 at 1373.985 kb on + strand, within Sama_1122 at 1374.163 kb on - strand at 1374.173 kb on + strand, within Sama_1123 at 1374.173 kb on + strand, within Sama_1123 at 1374.179 kb on + strand, within Sama_1123 at 1374.204 kb on + strand, within Sama_1123 at 1374.278 kb on + strand, within Sama_1123 at 1374.278 kb on + strand, within Sama_1123 at 1374.279 kb on - strand, within Sama_1123 at 1374.327 kb on + strand, within Sama_1123 at 1374.339 kb on - strand, within Sama_1123 at 1374.339 kb on - strand, within Sama_1123 at 1374.403 kb on + strand, within Sama_1123 at 1374.443 kb on + strand at 1374.443 kb on + strand at 1374.443 kb on + strand at 1374.443 kb on + strand at 1374.444 kb on - strand at 1374.444 kb on - strand at 1374.444 kb on - strand at 1374.508 kb on - strand at 1374.574 kb on + strand at 1374.574 kb on + strand at 1374.575 kb on - strand at 1374.575 kb on - strand at 1374.600 kb on + strand at 1374.600 kb on + strand at 1374.601 kb on - strand at 1374.705 kb on - strand, within Sama_1124 at 1374.719 kb on - strand, within Sama_1124 at 1374.845 kb on - strand, within Sama_1124 at 1374.886 kb on + strand, within Sama_1124 at 1374.889 kb on + strand, within Sama_1124 at 1374.890 kb on - strand, within Sama_1124 at 1374.890 kb on - strand, within Sama_1124 at 1374.890 kb on - strand, within Sama_1124 at 1374.890 kb on - strand, within Sama_1124 at 1374.947 kb on + strand at 1374.947 kb on + strand at 1374.947 kb on + strand at 1374.947 kb on + strand at 1374.948 kb on - strand at 1374.948 kb on - strand at 1374.948 kb on - strand at 1374.952 kb on - strand at 1374.952 kb on - strand at 1374.952 kb on - strand at 1374.952 kb on - strand at 1374.955 kb on + strand at 1375.018 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.078 kb on + strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.079 kb on - strand, within Sama_1125 at 1375.080 kb on + strand, within Sama_1125 at 1375.080 kb on + strand, within Sama_1125 at 1375.080 kb on + strand, within Sama_1125 at 1375.080 kb on + strand, within Sama_1125 at 1375.080 kb on + strand, within Sama_1125 at 1375.081 kb on - strand, within Sama_1125 at 1375.081 kb on - strand, within Sama_1125 at 1375.081 kb on - strand, within Sama_1125 at 1375.083 kb on + strand, within Sama_1125 at 1375.083 kb on + strand, within Sama_1125 at 1375.083 kb on + strand, within Sama_1125 at 1375.083 kb on + strand, within Sama_1125 at 1375.083 kb on + strand, within Sama_1125 at 1375.084 kb on - strand, within Sama_1125 at 1375.113 kb on + strand, within Sama_1125 at 1375.113 kb on + strand, within Sama_1125 at 1375.113 kb on + strand, within Sama_1125 at 1375.113 kb on + strand, within Sama_1125 at 1375.113 kb on + strand, within Sama_1125 at 1375.114 kb on - strand, within Sama_1125 at 1375.145 kb on - strand, within Sama_1125 at 1375.170 kb on + strand at 1375.170 kb on + strand at 1375.171 kb on - strand at 1375.171 kb on - strand at 1375.176 kb on + strand at 1375.176 kb on + strand at 1375.176 kb on + strand at 1375.176 kb on + strand at 1375.177 kb on - strand at 1375.177 kb on - strand at 1375.177 kb on - strand at 1375.208 kb on - strand at 1375.245 kb on + strand at 1375.246 kb on - strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.270 kb on + strand at 1375.271 kb on - strand at 1375.271 kb on - strand at 1375.271 kb on - strand at 1375.271 kb on - strand at 1375.271 kb on - strand at 1375.271 kb on - strand at 1375.271 kb on - strand at 1375.325 kb on + strand at 1375.326 kb on - strand at 1375.326 kb on - strand at 1375.347 kb on + strand at 1375.347 kb on + strand at 1375.348 kb on - strand at 1375.389 kb on + strand, within Sama_1126 at 1375.389 kb on + strand, within Sama_1126 at 1375.392 kb on - strand, within Sama_1126
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml remove 1,373,173 - Sama_1121 0.86 +0.0 1,373,173 - Sama_1121 0.86 +0.3 1,373,198 - +0.6 1,373,227 + +0.8 1,373,293 + +2.5 1,373,293 + -1.7 1,373,307 - -0.4 1,373,307 - -1.1 1,373,343 + -2.5 1,373,343 + -0.7 1,373,344 - +1.1 1,373,350 + +0.1 1,373,350 + +0.6 1,373,350 + +1.7 1,373,350 + -0.4 1,373,350 + -0.2 1,373,350 + -0.5 1,373,350 + -0.9 1,373,350 + +0.6 1,373,350 + -0.6 1,373,351 - -0.1 1,373,351 - +0.1 1,373,351 - -0.7 1,373,351 - -1.6 1,373,351 - +0.6 1,373,364 - -0.9 1,373,520 - Sama_1122 0.20 -0.2 1,373,525 + Sama_1122 0.21 +1.2 1,373,525 + Sama_1122 0.21 -2.5 1,373,525 + Sama_1122 0.21 +0.3 1,373,525 + Sama_1122 0.21 +0.3 1,373,525 + Sama_1122 0.21 -1.1 1,373,525 + Sama_1122 0.21 -0.1 1,373,526 - Sama_1122 0.21 +0.5 1,373,526 - Sama_1122 0.21 +0.9 1,373,526 - Sama_1122 0.21 +0.9 1,373,528 + Sama_1122 0.21 -0.1 1,373,529 - Sama_1122 0.22 -0.2 1,373,531 + Sama_1122 0.22 -1.1 1,373,531 + Sama_1122 0.22 +0.7 1,373,531 + Sama_1122 0.22 +0.3 1,373,531 + Sama_1122 0.22 +0.4 1,373,531 + Sama_1122 0.22 +0.3 1,373,531 + Sama_1122 0.22 +0.2 1,373,531 + Sama_1122 0.22 -0.1 1,373,531 + Sama_1122 0.22 +1.3 1,373,532 - Sama_1122 0.22 +0.2 1,373,532 - Sama_1122 0.22 -0.4 1,373,532 - Sama_1122 0.22 -0.2 1,373,532 - Sama_1122 0.22 +1.2 1,373,532 - Sama_1122 0.22 +0.2 1,373,532 - Sama_1122 0.22 +0.4 1,373,532 - Sama_1122 0.22 +0.3 1,373,532 - Sama_1122 0.22 +0.4 1,373,532 - Sama_1122 0.22 -0.1 1,373,553 - Sama_1122 0.25 +0.6 1,373,553 - Sama_1122 0.25 +0.7 1,373,607 + Sama_1122 0.32 +1.2 1,373,607 + Sama_1122 0.32 +0.1 1,373,608 - Sama_1122 0.32 +0.7 1,373,608 - Sama_1122 0.32 +0.2 1,373,643 + Sama_1122 0.36 +0.1 1,373,706 + Sama_1122 0.44 -1.0 1,373,706 + Sama_1122 0.44 +0.4 1,373,707 - Sama_1122 0.45 +1.1 1,373,707 - Sama_1122 0.45 +0.9 1,373,719 - Sama_1122 0.46 -1.5 1,373,738 + Sama_1122 0.49 +0.4 1,373,738 + Sama_1122 0.49 +0.1 1,373,739 - Sama_1122 0.49 +0.7 1,373,739 - Sama_1122 0.49 -0.4 1,373,739 - Sama_1122 0.49 +1.2 1,373,795 + Sama_1122 0.56 +0.5 1,373,795 + Sama_1122 0.56 -0.1 1,373,795 + Sama_1122 0.56 +0.4 1,373,795 + Sama_1122 0.56 +0.2 1,373,795 + Sama_1122 0.56 -0.6 1,373,795 + Sama_1122 0.56 -0.5 1,373,795 + Sama_1122 0.56 -0.8 1,373,795 + Sama_1122 0.56 +0.2 1,373,795 + Sama_1122 0.56 -0.3 1,373,795 + Sama_1122 0.56 +1.5 1,373,795 + Sama_1122 0.56 +0.3 1,373,795 + Sama_1122 0.56 -0.7 1,373,796 - Sama_1122 0.56 -1.0 1,373,796 - Sama_1122 0.56 -0.1 1,373,796 - Sama_1122 0.56 -1.6 1,373,796 - Sama_1122 0.56 +0.1 1,373,796 - Sama_1122 0.56 -0.2 1,373,796 - Sama_1122 0.56 -0.2 1,373,796 - Sama_1122 0.56 +0.5 1,373,796 - Sama_1122 0.56 +0.5 1,373,887 + Sama_1122 0.68 -0.5 1,373,887 + Sama_1122 0.68 +0.5 1,373,887 + Sama_1122 0.68 -1.1 1,373,887 + Sama_1122 0.68 -0.6 1,373,888 - Sama_1122 0.68 -0.6 1,373,911 + Sama_1122 0.71 -0.1 1,373,911 + Sama_1122 0.71 +1.2 1,373,911 + Sama_1122 0.71 -0.2 1,373,912 - Sama_1122 0.71 -0.3 1,373,955 + Sama_1122 0.77 +0.7 1,373,956 - Sama_1122 0.77 +0.0 1,373,985 + Sama_1122 0.80 -2.2 1,374,163 - +0.2 1,374,173 + Sama_1123 0.12 +2.3 1,374,173 + Sama_1123 0.12 +0.9 1,374,179 + Sama_1123 0.14 -1.3 1,374,204 + Sama_1123 0.22 -1.1 1,374,278 + Sama_1123 0.46 -1.4 1,374,278 + Sama_1123 0.46 -0.1 1,374,279 - Sama_1123 0.47 -0.7 1,374,327 + Sama_1123 0.62 -0.4 1,374,339 - Sama_1123 0.66 -1.0 1,374,339 - Sama_1123 0.66 +0.4 1,374,403 + Sama_1123 0.87 -0.2 1,374,443 + -0.1 1,374,443 + +0.7 1,374,443 + -0.9 1,374,443 + -1.1 1,374,444 - -0.1 1,374,444 - -1.3 1,374,444 - +0.5 1,374,508 - -0.1 1,374,574 + -0.9 1,374,574 + +1.1 1,374,575 - -0.4 1,374,575 - +1.1 1,374,600 + -0.1 1,374,600 + +1.3 1,374,601 - +0.6 1,374,705 - Sama_1124 0.33 -0.7 1,374,719 - Sama_1124 0.37 -0.1 1,374,845 - Sama_1124 0.72 -1.7 1,374,886 + Sama_1124 0.83 +0.3 1,374,889 + Sama_1124 0.84 +0.0 1,374,890 - Sama_1124 0.85 +0.8 1,374,890 - Sama_1124 0.85 +0.0 1,374,890 - Sama_1124 0.85 +0.5 1,374,890 - Sama_1124 0.85 -0.7 1,374,947 + +0.3 1,374,947 + +0.3 1,374,947 + +1.9 1,374,947 + -0.4 1,374,948 - -0.2 1,374,948 - -0.6 1,374,948 - -0.1 1,374,952 - -0.7 1,374,952 - -0.3 1,374,952 - -0.8 1,374,952 - +0.5 1,374,955 + -0.6 1,375,018 + Sama_1125 0.31 +0.2 1,375,078 + Sama_1125 0.57 -1.8 1,375,078 + Sama_1125 0.57 -1.1 1,375,078 + Sama_1125 0.57 -0.5 1,375,078 + Sama_1125 0.57 -0.1 1,375,078 + Sama_1125 0.57 +0.6 1,375,078 + Sama_1125 0.57 +0.2 1,375,078 + Sama_1125 0.57 -0.4 1,375,078 + Sama_1125 0.57 -1.1 1,375,078 + Sama_1125 0.57 -0.6 1,375,078 + Sama_1125 0.57 -0.3 1,375,078 + Sama_1125 0.57 -1.3 1,375,078 + Sama_1125 0.57 +1.3 1,375,078 + Sama_1125 0.57 -0.8 1,375,079 - Sama_1125 0.58 +0.0 1,375,079 - Sama_1125 0.58 -0.7 1,375,079 - Sama_1125 0.58 -0.2 1,375,079 - Sama_1125 0.58 +0.1 1,375,079 - Sama_1125 0.58 +0.3 1,375,079 - Sama_1125 0.58 -0.1 1,375,079 - Sama_1125 0.58 +0.5 1,375,079 - Sama_1125 0.58 +0.3 1,375,079 - Sama_1125 0.58 -0.4 1,375,079 - Sama_1125 0.58 -0.7 1,375,079 - Sama_1125 0.58 -1.3 1,375,079 - Sama_1125 0.58 +0.9 1,375,080 + Sama_1125 0.58 -0.4 1,375,080 + Sama_1125 0.58 -1.1 1,375,080 + Sama_1125 0.58 -0.4 1,375,080 + Sama_1125 0.58 -0.4 1,375,080 + Sama_1125 0.58 -0.2 1,375,081 - Sama_1125 0.58 +0.2 1,375,081 - Sama_1125 0.58 +0.4 1,375,081 - Sama_1125 0.58 -1.1 1,375,083 + Sama_1125 0.59 +1.2 1,375,083 + Sama_1125 0.59 +0.2 1,375,083 + Sama_1125 0.59 -0.1 1,375,083 + Sama_1125 0.59 +1.1 1,375,083 + Sama_1125 0.59 +1.5 1,375,084 - Sama_1125 0.60 +0.1 1,375,113 + Sama_1125 0.72 -1.1 1,375,113 + Sama_1125 0.72 +0.4 1,375,113 + Sama_1125 0.72 -0.1 1,375,113 + Sama_1125 0.72 -0.1 1,375,113 + Sama_1125 0.72 +0.6 1,375,114 - Sama_1125 0.73 -0.5 1,375,145 - Sama_1125 0.86 -0.3 1,375,170 + +0.8 1,375,170 + +0.9 1,375,171 - +0.2 1,375,171 - -1.2 1,375,176 + -1.5 1,375,176 + +0.9 1,375,176 + +0.8 1,375,176 + +0.9 1,375,177 - +0.2 1,375,177 - +0.3 1,375,177 - +0.4 1,375,208 - +0.1 1,375,245 + +0.8 1,375,246 - +0.8 1,375,270 + +0.2 1,375,270 + -0.6 1,375,270 + +0.9 1,375,270 + +0.4 1,375,270 + +0.6 1,375,270 + -0.9 1,375,270 + -0.7 1,375,270 + -0.8 1,375,270 + -0.7 1,375,270 + -0.7 1,375,270 + -0.5 1,375,270 + -0.9 1,375,270 + -0.9 1,375,271 - -0.8 1,375,271 - -0.2 1,375,271 - -1.4 1,375,271 - +0.0 1,375,271 - -0.2 1,375,271 - +0.6 1,375,271 - +1.5 1,375,325 + -1.4 1,375,326 - -0.2 1,375,326 - -0.5 1,375,347 + +0.6 1,375,347 + -0.1 1,375,348 - -1.2 1,375,389 + Sama_1126 0.12 +0.0 1,375,389 + Sama_1126 0.12 -0.2 1,375,392 - Sama_1126 0.13 -0.6
Or see this region's nucleotide sequence