Strain Fitness in Shewanella amazonensis SB2B around Sama_0587

Experiment: benzoic 0.29 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0586 and Sama_0587 are separated by 324 nucleotidesSama_0587 and Sama_0588 are separated by 3 nucleotidesSama_0588 and Sama_0589 are separated by 54 nucleotides Sama_0586: Sama_0586 - LysR family transcriptional regulator (RefSeq), at 732,315 to 733,223 _0586 Sama_0587: Sama_0587 - PepSY-associated TM helix (RefSeq), at 733,548 to 734,306 _0587 Sama_0588: Sama_0588 - FMN-binding (RefSeq), at 734,310 to 734,819 _0588 Sama_0589: Sama_0589 - phosphate-selective porin O and P (RefSeq), at 734,874 to 736,049 _0589 Position (kb) 733 734 735Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 732.562 kb on + strand, within Sama_0586at 732.579 kb on + strand, within Sama_0586at 732.637 kb on + strand, within Sama_0586at 732.637 kb on + strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.644 kb on + strand, within Sama_0586at 732.644 kb on + strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.730 kb on + strand, within Sama_0586at 732.871 kb on + strand, within Sama_0586at 732.872 kb on - strand, within Sama_0586at 732.943 kb on + strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.973 kb on - strand, within Sama_0586at 732.973 kb on - strand, within Sama_0586at 732.987 kb on + strand, within Sama_0586at 733.250 kb on + strandat 733.261 kb on + strandat 733.266 kb on - strandat 733.266 kb on - strandat 733.282 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.336 kb on - strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.351 kb on - strandat 733.493 kb on + strandat 733.507 kb on + strandat 733.516 kb on + strandat 733.516 kb on + strandat 733.549 kb on + strandat 733.550 kb on - strandat 733.573 kb on - strandat 733.583 kb on - strandat 733.583 kb on - strandat 733.605 kb on + strandat 733.606 kb on - strandat 733.725 kb on + strand, within Sama_0587at 733.726 kb on - strand, within Sama_0587at 733.816 kb on + strand, within Sama_0587at 733.816 kb on + strand, within Sama_0587at 733.817 kb on - strand, within Sama_0587at 733.914 kb on + strand, within Sama_0587at 733.915 kb on - strand, within Sama_0587at 733.942 kb on + strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.025 kb on - strand, within Sama_0587at 734.062 kb on + strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.116 kb on - strand, within Sama_0587at 734.170 kb on - strand, within Sama_0587at 734.176 kb on - strand, within Sama_0587at 734.217 kb on - strand, within Sama_0587at 734.276 kb on + strandat 734.277 kb on - strandat 734.286 kb on - strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.342 kb on - strandat 734.342 kb on - strandat 734.376 kb on + strand, within Sama_0588at 734.409 kb on - strand, within Sama_0588at 734.503 kb on + strand, within Sama_0588at 734.503 kb on + strand, within Sama_0588at 734.504 kb on - strand, within Sama_0588at 734.505 kb on + strand, within Sama_0588at 734.506 kb on - strand, within Sama_0588at 734.506 kb on - strand, within Sama_0588at 734.511 kb on + strand, within Sama_0588at 734.512 kb on - strand, within Sama_0588at 734.512 kb on - strand, within Sama_0588at 734.526 kb on + strand, within Sama_0588at 734.527 kb on - strand, within Sama_0588at 734.527 kb on - strand, within Sama_0588at 734.561 kb on + strand, within Sama_0588at 734.562 kb on - strand, within Sama_0588at 734.562 kb on - strand, within Sama_0588at 734.620 kb on + strand, within Sama_0588at 734.626 kb on - strand, within Sama_0588at 734.641 kb on + strand, within Sama_0588at 734.642 kb on - strand, within Sama_0588at 734.682 kb on - strand, within Sama_0588at 734.748 kb on - strand, within Sama_0588at 734.809 kb on + strandat 734.809 kb on + strandat 734.810 kb on - strandat 734.810 kb on - strandat 734.839 kb on + strandat 734.839 kb on + strandat 734.840 kb on - strandat 734.851 kb on + strandat 734.851 kb on + strandat 734.862 kb on + strandat 734.863 kb on - strandat 734.863 kb on - strandat 734.867 kb on - strandat 734.867 kb on - strandat 734.867 kb on - strandat 734.885 kb on - strandat 734.953 kb on - strandat 734.953 kb on - strandat 734.974 kb on + strandat 734.975 kb on - strandat 734.981 kb on + strandat 734.981 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 735.098 kb on - strand, within Sama_0589at 735.098 kb on - strand, within Sama_0589at 735.163 kb on + strand, within Sama_0589at 735.164 kb on - strand, within Sama_0589at 735.164 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.197 kb on - strand, within Sama_0589at 735.201 kb on - strand, within Sama_0589at 735.237 kb on + strand, within Sama_0589at 735.238 kb on - strand, within Sama_0589at 735.248 kb on + strand, within Sama_0589

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml
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732,562 + Sama_0586 0.27 +0.0
732,579 + Sama_0586 0.29 -0.3
732,637 + Sama_0586 0.35 +0.5
732,637 + Sama_0586 0.35 -1.0
732,638 - Sama_0586 0.36 +0.2
732,638 - Sama_0586 0.36 -0.4
732,638 - Sama_0586 0.36 +0.5
732,638 - Sama_0586 0.36 -0.3
732,638 - Sama_0586 0.36 -1.2
732,638 - Sama_0586 0.36 +0.4
732,644 + Sama_0586 0.36 +1.0
732,644 + Sama_0586 0.36 +2.0
732,645 - Sama_0586 0.36 +0.2
732,645 - Sama_0586 0.36 -0.7
732,645 - Sama_0586 0.36 -0.0
732,645 - Sama_0586 0.36 +0.5
732,730 + Sama_0586 0.46 +0.0
732,871 + Sama_0586 0.61 -0.2
732,872 - Sama_0586 0.61 +0.6
732,943 + Sama_0586 0.69 -0.1
732,944 - Sama_0586 0.69 +0.3
732,944 - Sama_0586 0.69 +0.5
732,944 - Sama_0586 0.69 -0.2
732,944 - Sama_0586 0.69 +1.1
732,973 - Sama_0586 0.72 +0.2
732,973 - Sama_0586 0.72 +0.8
732,987 + Sama_0586 0.74 -1.1
733,250 + -2.6
733,261 + +0.3
733,266 - -0.1
733,266 - -0.1
733,282 + -1.0
733,335 + -2.9
733,335 + -0.5
733,335 + +0.5
733,335 + +0.6
733,335 + -1.6
733,335 + -0.6
733,336 - -0.2
733,350 + +0.2
733,350 + -0.1
733,350 + +0.2
733,350 + -2.0
733,350 + +0.7
733,351 - -1.1
733,493 + +0.4
733,507 + -0.0
733,516 + +0.3
733,516 + +0.5
733,549 + -0.5
733,550 - +0.5
733,573 - -0.0
733,583 - -0.4
733,583 - -0.7
733,605 + -2.3
733,606 - +0.6
733,725 + Sama_0587 0.23 -1.8
733,726 - Sama_0587 0.23 -2.0
733,816 + Sama_0587 0.35 -1.8
733,816 + Sama_0587 0.35 -1.6
733,817 - Sama_0587 0.35 -2.2
733,914 + Sama_0587 0.48 +0.2
733,915 - Sama_0587 0.48 -2.3
733,942 + Sama_0587 0.52 +0.4
733,943 - Sama_0587 0.52 -1.5
733,943 - Sama_0587 0.52 -0.2
733,943 - Sama_0587 0.52 -1.8
733,943 - Sama_0587 0.52 -1.1
734,024 + Sama_0587 0.63 -2.4
734,024 + Sama_0587 0.63 -2.2
734,024 + Sama_0587 0.63 -0.9
734,025 - Sama_0587 0.63 -1.1
734,062 + Sama_0587 0.68 -0.8
734,063 - Sama_0587 0.68 -1.9
734,063 - Sama_0587 0.68 -1.6
734,063 - Sama_0587 0.68 -1.6
734,104 + Sama_0587 0.73 -1.8
734,104 + Sama_0587 0.73 +0.2
734,105 - Sama_0587 0.73 -0.5
734,105 - Sama_0587 0.73 -1.8
734,107 + Sama_0587 0.74 -2.5
734,107 + Sama_0587 0.74 -3.0
734,116 - Sama_0587 0.75 -1.4
734,170 - Sama_0587 0.82 -0.4
734,176 - Sama_0587 0.83 -1.6
734,217 - Sama_0587 0.88 -0.8
734,276 + -0.4
734,277 - -1.6
734,286 - -1.1
734,341 + -1.5
734,341 + -1.8
734,341 + -2.1
734,341 + -0.8
734,342 - -2.0
734,342 - +0.5
734,376 + Sama_0588 0.13 -1.4
734,409 - Sama_0588 0.19 -0.4
734,503 + Sama_0588 0.38 -3.0
734,503 + Sama_0588 0.38 +0.2
734,504 - Sama_0588 0.38 -1.4
734,505 + Sama_0588 0.38 -1.8
734,506 - Sama_0588 0.38 -1.6
734,506 - Sama_0588 0.38 -1.4
734,511 + Sama_0588 0.39 -0.9
734,512 - Sama_0588 0.40 -1.0
734,512 - Sama_0588 0.40 -2.9
734,526 + Sama_0588 0.42 +0.2
734,527 - Sama_0588 0.43 -1.8
734,527 - Sama_0588 0.43 -1.6
734,561 + Sama_0588 0.49 +0.1
734,562 - Sama_0588 0.49 -3.2
734,562 - Sama_0588 0.49 -2.3
734,620 + Sama_0588 0.61 -1.4
734,626 - Sama_0588 0.62 -0.6
734,641 + Sama_0588 0.65 -3.0
734,642 - Sama_0588 0.65 -0.8
734,682 - Sama_0588 0.73 -3.2
734,748 - Sama_0588 0.86 -1.0
734,809 + -0.1
734,809 + -0.2
734,810 - -2.4
734,810 - -0.5
734,839 + -1.4
734,839 + -0.6
734,840 - +0.9
734,851 + -1.5
734,851 + -1.2
734,862 + +0.4
734,863 - -0.1
734,863 - +0.7
734,867 - -1.2
734,867 - -0.9
734,867 - +1.2
734,885 - -1.1
734,953 - -0.0
734,953 - -2.4
734,974 + -1.4
734,975 - -2.0
734,981 + -4.2
734,981 - -0.4
734,982 - -1.7
734,982 - -0.5
734,982 - -2.0
734,982 - -1.2
734,985 + -1.4
734,985 + -1.1
734,985 + -1.4
734,985 + -0.4
734,985 + -0.8
734,986 - -1.4
734,986 - -1.4
734,986 - -1.0
734,986 - -2.9
734,986 - -1.1
735,098 - Sama_0589 0.19 -0.2
735,098 - Sama_0589 0.19 -0.8
735,163 + Sama_0589 0.25 -0.0
735,164 - Sama_0589 0.25 -1.4
735,164 - Sama_0589 0.25 -2.2
735,180 - Sama_0589 0.26 -2.4
735,180 - Sama_0589 0.26 -1.3
735,180 - Sama_0589 0.26 -0.4
735,180 - Sama_0589 0.26 -1.2
735,197 - Sama_0589 0.27 -1.5
735,201 - Sama_0589 0.28 -1.1
735,237 + Sama_0589 0.31 -0.6
735,238 - Sama_0589 0.31 -1.7
735,248 + Sama_0589 0.32 -0.4

Or see this region's nucleotide sequence