Experiment: benzoic 0.29 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hslO and Sama_0167 are separated by 15 nucleotides Sama_0167 and Sama_0168 are separated by 271 nucleotides Sama_0168 and Sama_0169 are separated by 26 nucleotides
Sama_0166: hslO - Hsp33-like chaperonin (RefSeq), at 195,721 to 196,605
hslO
Sama_0167: Sama_0167 - heat shock protein 15 (RefSeq), at 196,621 to 197,025
_0167
Sama_0168: Sama_0168 - general secretion pathway protein C (RefSeq), at 197,297 to 198,220
_0168
Sama_0169: Sama_0169 - type II and III secretion system protein (RefSeq), at 198,247 to 200,358
_0169
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.344 kb on + strand, within hslO at 196.344 kb on + strand, within hslO at 196.344 kb on + strand, within hslO at 196.345 kb on - strand, within hslO at 196.345 kb on - strand, within hslO at 196.345 kb on - strand, within hslO at 196.484 kb on + strand, within hslO at 196.484 kb on + strand, within hslO at 196.484 kb on + strand, within hslO at 196.511 kb on + strand, within hslO at 196.511 kb on + strand, within hslO at 196.565 kb on + strand at 196.565 kb on + strand at 196.566 kb on - strand at 196.566 kb on - strand at 196.566 kb on - strand at 196.571 kb on + strand at 196.572 kb on - strand at 196.573 kb on + strand at 196.573 kb on + strand at 196.573 kb on + strand at 196.574 kb on - strand at 196.574 kb on - strand at 196.574 kb on - strand at 196.625 kb on + strand at 196.669 kb on - strand, within Sama_0167 at 196.669 kb on - strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.703 kb on - strand, within Sama_0167 at 196.703 kb on - strand, within Sama_0167 at 196.703 kb on - strand, within Sama_0167 at 196.704 kb on + strand, within Sama_0167 at 196.704 kb on + strand, within Sama_0167 at 196.704 kb on + strand, within Sama_0167 at 196.704 kb on + strand, within Sama_0167 at 196.704 kb on + strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.744 kb on + strand, within Sama_0167 at 196.744 kb on + strand, within Sama_0167 at 196.744 kb on + strand, within Sama_0167 at 196.745 kb on - strand, within Sama_0167 at 196.766 kb on + strand, within Sama_0167 at 196.766 kb on + strand, within Sama_0167 at 196.767 kb on - strand, within Sama_0167 at 196.767 kb on - strand, within Sama_0167 at 196.838 kb on + strand, within Sama_0167 at 196.838 kb on + strand, within Sama_0167 at 196.849 kb on + strand, within Sama_0167 at 196.849 kb on + strand, within Sama_0167 at 196.849 kb on + strand, within Sama_0167 at 196.849 kb on + strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.854 kb on + strand, within Sama_0167 at 196.854 kb on + strand, within Sama_0167 at 196.854 kb on + strand, within Sama_0167 at 196.855 kb on - strand, within Sama_0167 at 196.855 kb on - strand, within Sama_0167 at 196.855 kb on - strand, within Sama_0167 at 196.855 kb on - strand, within Sama_0167 at 196.855 kb on - strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.912 kb on + strand, within Sama_0167 at 196.912 kb on + strand, within Sama_0167 at 196.912 kb on + strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.918 kb on - strand, within Sama_0167 at 196.958 kb on + strand, within Sama_0167 at 196.958 kb on + strand, within Sama_0167 at 196.959 kb on - strand, within Sama_0167 at 196.984 kb on - strand, within Sama_0167 at 196.984 kb on - strand, within Sama_0167 at 197.005 kb on + strand at 197.005 kb on + strand at 197.006 kb on - strand at 197.025 kb on + strand at 197.025 kb on + strand at 197.025 kb on + strand at 197.025 kb on + strand at 197.054 kb on + strand at 197.054 kb on + strand at 197.054 kb on + strand at 197.054 kb on + strand at 197.054 kb on + strand at 197.054 kb on + strand at 197.055 kb on - strand at 197.055 kb on - strand at 197.055 kb on - strand at 197.055 kb on - strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.064 kb on - strand at 197.064 kb on + strand at 197.064 kb on + strand at 197.106 kb on + strand at 197.107 kb on - strand at 197.162 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.168 kb on - strand at 197.168 kb on - strand at 197.168 kb on - strand at 197.168 kb on - strand at 197.200 kb on + strand at 197.279 kb on + strand at 197.291 kb on + strand at 197.292 kb on - strand at 197.512 kb on + strand, within Sama_0168 at 197.512 kb on + strand, within Sama_0168 at 197.513 kb on - strand, within Sama_0168 at 197.691 kb on - strand, within Sama_0168 at 197.808 kb on - strand, within Sama_0168 at 197.808 kb on - strand, within Sama_0168 at 197.824 kb on + strand, within Sama_0168 at 197.824 kb on + strand, within Sama_0168 at 197.835 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 198.171 kb on + strand at 198.171 kb on + strand at 198.171 kb on + strand at 198.171 kb on + strand at 198.218 kb on + strand at 198.230 kb on + strand at 198.240 kb on + strand at 198.240 kb on + strand at 198.241 kb on - strand at 198.241 kb on - strand at 198.245 kb on - strand at 198.297 kb on + strand at 198.390 kb on + strand at 198.391 kb on - strand at 198.488 kb on - strand, within Sama_0169 at 198.520 kb on + strand, within Sama_0169 at 198.521 kb on - strand, within Sama_0169 at 198.661 kb on + strand, within Sama_0169 at 198.662 kb on - strand, within Sama_0169 at 198.735 kb on + strand, within Sama_0169 at 198.739 kb on + strand, within Sama_0169 at 198.740 kb on - strand, within Sama_0169 at 198.816 kb on - strand, within Sama_0169 at 198.816 kb on - strand, within Sama_0169 at 198.819 kb on + strand, within Sama_0169 at 198.966 kb on + strand, within Sama_0169 at 198.967 kb on - strand, within Sama_0169 at 198.969 kb on + strand, within Sama_0169 at 199.075 kb on + strand, within Sama_0169 at 199.197 kb on + strand, within Sama_0169
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.29 mg/ml remove 196,344 + hslO Sama_0166 0.70 +0.1 196,344 + hslO Sama_0166 0.70 +0.4 196,344 + hslO Sama_0166 0.70 -0.8 196,345 - hslO Sama_0166 0.71 +0.9 196,345 - hslO Sama_0166 0.71 -0.7 196,345 - hslO Sama_0166 0.71 +0.4 196,484 + hslO Sama_0166 0.86 +0.6 196,484 + hslO Sama_0166 0.86 +1.0 196,484 + hslO Sama_0166 0.86 -0.4 196,511 + hslO Sama_0166 0.89 +0.4 196,511 + hslO Sama_0166 0.89 +0.3 196,565 + -0.9 196,565 + -0.1 196,566 - +1.2 196,566 - +0.7 196,566 - -1.1 196,571 + -0.8 196,572 - -0.1 196,573 + -0.1 196,573 + +1.6 196,573 + +2.2 196,574 - -0.4 196,574 - +2.0 196,574 - -1.4 196,625 + -0.3 196,669 - Sama_0167 0.12 +0.3 196,669 - Sama_0167 0.12 -0.0 196,702 + Sama_0167 0.20 -1.9 196,702 + Sama_0167 0.20 -2.1 196,702 + Sama_0167 0.20 +0.2 196,702 + Sama_0167 0.20 -1.7 196,702 + Sama_0167 0.20 +0.6 196,702 + Sama_0167 0.20 +1.1 196,703 - Sama_0167 0.20 +0.7 196,703 - Sama_0167 0.20 -0.0 196,703 - Sama_0167 0.20 +1.2 196,704 + Sama_0167 0.20 -0.7 196,704 + Sama_0167 0.20 -0.3 196,704 + Sama_0167 0.20 -0.1 196,704 + Sama_0167 0.20 -0.3 196,704 + Sama_0167 0.20 +0.7 196,705 - Sama_0167 0.21 -0.0 196,705 - Sama_0167 0.21 -0.6 196,705 - Sama_0167 0.21 -0.1 196,705 - Sama_0167 0.21 -1.2 196,705 - Sama_0167 0.21 -0.1 196,705 - Sama_0167 0.21 +0.0 196,705 - Sama_0167 0.21 -1.0 196,705 - Sama_0167 0.21 +0.7 196,705 - Sama_0167 0.21 +0.0 196,705 - Sama_0167 0.21 -0.8 196,744 + Sama_0167 0.30 +0.2 196,744 + Sama_0167 0.30 +0.2 196,744 + Sama_0167 0.30 +0.4 196,745 - Sama_0167 0.31 -0.3 196,766 + Sama_0167 0.36 +0.7 196,766 + Sama_0167 0.36 -0.1 196,767 - Sama_0167 0.36 +1.1 196,767 - Sama_0167 0.36 +0.0 196,838 + Sama_0167 0.54 -0.5 196,838 + Sama_0167 0.54 +2.2 196,849 + Sama_0167 0.56 +0.4 196,849 + Sama_0167 0.56 +0.2 196,849 + Sama_0167 0.56 +1.1 196,849 + Sama_0167 0.56 -1.2 196,850 - Sama_0167 0.57 +0.6 196,850 - Sama_0167 0.57 +0.4 196,850 - Sama_0167 0.57 -0.8 196,850 - Sama_0167 0.57 -0.8 196,850 - Sama_0167 0.57 -0.1 196,850 - Sama_0167 0.57 -0.6 196,850 - Sama_0167 0.57 -0.6 196,854 + Sama_0167 0.58 -1.1 196,854 + Sama_0167 0.58 -0.7 196,854 + Sama_0167 0.58 -2.5 196,855 - Sama_0167 0.58 -0.4 196,855 - Sama_0167 0.58 +0.2 196,855 - Sama_0167 0.58 +0.1 196,855 - Sama_0167 0.58 +0.7 196,855 - Sama_0167 0.58 +1.1 196,907 + Sama_0167 0.71 -0.6 196,907 + Sama_0167 0.71 +0.8 196,907 + Sama_0167 0.71 -0.6 196,907 + Sama_0167 0.71 -0.2 196,907 + Sama_0167 0.71 -0.8 196,907 + Sama_0167 0.71 +0.1 196,907 + Sama_0167 0.71 -2.3 196,907 + Sama_0167 0.71 +0.9 196,907 + Sama_0167 0.71 -0.3 196,907 + Sama_0167 0.71 +0.0 196,907 + Sama_0167 0.71 -0.2 196,907 + Sama_0167 0.71 +1.2 196,908 - Sama_0167 0.71 -0.3 196,908 - Sama_0167 0.71 -0.9 196,908 - Sama_0167 0.71 +0.3 196,908 - Sama_0167 0.71 -0.1 196,908 - Sama_0167 0.71 +0.3 196,908 - Sama_0167 0.71 +0.1 196,912 + Sama_0167 0.72 -0.6 196,912 + Sama_0167 0.72 -1.0 196,912 + Sama_0167 0.72 +0.7 196,913 - Sama_0167 0.72 +0.7 196,913 - Sama_0167 0.72 +0.1 196,913 - Sama_0167 0.72 +0.2 196,913 - Sama_0167 0.72 +1.2 196,913 - Sama_0167 0.72 -0.5 196,913 - Sama_0167 0.72 +0.2 196,913 - Sama_0167 0.72 +0.4 196,918 - Sama_0167 0.73 +0.4 196,958 + Sama_0167 0.83 -0.9 196,958 + Sama_0167 0.83 -0.4 196,959 - Sama_0167 0.83 -1.3 196,984 - Sama_0167 0.90 +0.4 196,984 - Sama_0167 0.90 -1.1 197,005 + +0.5 197,005 + +0.4 197,006 - -1.0 197,025 + +0.3 197,025 + -0.2 197,025 + -0.0 197,025 + +0.1 197,054 + -0.1 197,054 + +0.2 197,054 + +0.1 197,054 + -2.0 197,054 + -1.1 197,054 + -1.4 197,055 - +0.7 197,055 - +0.6 197,055 - -0.5 197,055 - +0.4 197,058 + +0.4 197,058 + -0.1 197,058 + -0.5 197,058 + +0.9 197,058 + -0.6 197,058 + -0.9 197,058 + -2.4 197,058 + -0.5 197,058 + -0.4 197,058 + -1.7 197,058 + +0.0 197,059 - +0.0 197,059 - +0.2 197,059 - -0.4 197,059 - +0.3 197,059 - -0.2 197,059 - -0.4 197,059 - -0.6 197,059 - +0.9 197,059 - -1.9 197,059 - +0.4 197,059 - -0.5 197,059 - -0.2 197,059 - +0.2 197,059 - -0.0 197,059 - +0.1 197,059 - -1.5 197,059 - +0.4 197,060 + +1.2 197,060 + +0.2 197,060 + -1.0 197,060 + +0.2 197,060 + -0.2 197,060 + +0.8 197,060 + -0.6 197,060 + +0.4 197,060 + -0.1 197,060 + -0.5 197,060 + +0.3 197,060 + -0.8 197,060 + +1.3 197,060 + -0.6 197,060 + +0.4 197,060 + +0.4 197,060 + -0.0 197,060 + -0.6 197,060 + -1.0 197,060 + -0.6 197,060 + +0.1 197,060 + -0.1 197,060 + -0.8 197,060 + -0.4 197,060 + -0.1 197,060 + -0.1 197,060 + -0.5 197,060 + +0.3 197,060 + -3.1 197,061 - +0.0 197,061 - -0.3 197,061 - -0.6 197,061 - -0.0 197,061 - -0.1 197,061 - +0.2 197,061 - -0.0 197,061 - -0.2 197,061 - -1.0 197,061 - -0.1 197,061 - -0.4 197,061 - +0.1 197,061 - +0.9 197,061 - -0.7 197,061 - -0.1 197,061 - +0.0 197,061 - -0.4 197,061 - +0.5 197,061 - +0.1 197,061 - +0.4 197,061 - -2.0 197,061 - -0.6 197,061 - -0.2 197,061 - -1.6 197,061 - -0.9 197,061 - -0.1 197,061 - -2.1 197,061 - +0.3 197,061 - -0.1 197,061 - +0.2 197,061 - +0.0 197,061 - -0.6 197,061 - -0.3 197,061 - -0.1 197,061 - -0.2 197,061 - -1.3 197,061 - -0.1 197,064 - +1.0 197,064 + -0.0 197,064 + -0.4 197,106 + -0.6 197,107 - +1.2 197,162 + -1.5 197,167 + +0.0 197,167 + -0.7 197,167 + -0.6 197,167 + +0.9 197,167 + -0.4 197,167 + -0.5 197,167 + -1.9 197,167 + +0.1 197,167 + -1.4 197,167 + -1.2 197,168 - +0.9 197,168 - +0.8 197,168 - -0.7 197,168 - -0.4 197,200 + -0.8 197,279 + +0.3 197,291 + -1.3 197,292 - -0.6 197,512 + Sama_0168 0.23 -1.7 197,512 + Sama_0168 0.23 -1.4 197,513 - Sama_0168 0.23 -0.1 197,691 - Sama_0168 0.43 +0.4 197,808 - Sama_0168 0.55 +0.4 197,808 - Sama_0168 0.55 -0.9 197,824 + Sama_0168 0.57 -0.2 197,824 + Sama_0168 0.57 +0.7 197,835 + Sama_0168 0.58 +0.2 197,966 + Sama_0168 0.72 -1.3 197,966 + Sama_0168 0.72 -0.8 197,966 + Sama_0168 0.72 -0.1 197,966 + Sama_0168 0.72 -1.6 197,966 + Sama_0168 0.72 -0.8 198,171 + +0.0 198,171 + -0.1 198,171 + -0.8 198,171 + +1.4 198,218 + -1.1 198,230 + -0.9 198,240 + -0.7 198,240 + +0.3 198,241 - -0.6 198,241 - -1.6 198,245 - +1.4 198,297 + -0.9 198,390 + -1.1 198,391 - -1.9 198,488 - Sama_0169 0.11 -0.6 198,520 + Sama_0169 0.13 -0.6 198,521 - Sama_0169 0.13 -0.6 198,661 + Sama_0169 0.20 +2.2 198,662 - Sama_0169 0.20 -1.1 198,735 + Sama_0169 0.23 -0.1 198,739 + Sama_0169 0.23 -0.9 198,740 - Sama_0169 0.23 -0.3 198,816 - Sama_0169 0.27 +0.4 198,816 - Sama_0169 0.27 +1.4 198,819 + Sama_0169 0.27 -0.6 198,966 + Sama_0169 0.34 +0.1 198,967 - Sama_0169 0.34 -1.3 198,969 + Sama_0169 0.34 -1.1 199,075 + Sama_0169 0.39 +1.4 199,197 + Sama_0169 0.45 +0.6
Or see this region's nucleotide sequence