Strain Fitness in Shewanella amazonensis SB2B around Sama_0135

Experiment: benzoic 0.29 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	benzoic 0.29 mg/ml
150,589	+		Sama_0133	0.34	-0.3
150,589	+		Sama_0133	0.34	-0.5
150,589	+		Sama_0133	0.34	+0.3
150,590	-		Sama_0133	0.34	-0.1
150,602	+		Sama_0133	0.36	-0.2
150,602	+		Sama_0133	0.36	-0.5
150,603	-		Sama_0133	0.36	-0.5
150,686	+		Sama_0133	0.48	+0.3
150,694	+		Sama_0133	0.49	-0.3
150,694	+		Sama_0133	0.49	-0.4
150,694	+		Sama_0133	0.49	-1.0
150,695	-		Sama_0133	0.50	+0.1
150,695	-		Sama_0133	0.50	+1.0
150,696	+		Sama_0133	0.50	+0.5
150,696	+		Sama_0133	0.50	+0.4
150,697	-		Sama_0133	0.50	+0.4
150,697	-		Sama_0133	0.50	+0.0
150,697	-		Sama_0133	0.50	+1.5
150,697	-		Sama_0133	0.50	+1.2
150,697	-		Sama_0133	0.50	-0.1
150,697	-		Sama_0133	0.50	+0.0
150,798	+		Sama_0133	0.65	+0.5
150,868	+		Sama_0133	0.75	+0.5
150,868	+		Sama_0133	0.75	-0.5
150,868	+		Sama_0133	0.75	+0.7
150,868	+		Sama_0133	0.75	-0.1
150,869	-		Sama_0133	0.75	-1.1
150,869	-		Sama_0133	0.75	+0.1
150,898	+		Sama_0133	0.80	-1.1
150,898	+		Sama_0133	0.80	-0.0
150,898	+		Sama_0133	0.80	+0.4
150,899	-		Sama_0133	0.80	+0.0
150,899	-		Sama_0133	0.80	+0.5
150,906	+		Sama_0133	0.81	-0.2
151,010	-				+0.2
151,022	+				-0.3
151,022	+				+0.4
151,022	+				-0.1
151,023	-				-0.2
151,023	-				+0.1
151,042	+				-0.1
151,042	+				+0.1
151,043	-				+0.1
151,155	+		Sama_0134	0.24	-1.1
151,247	+		Sama_0134	0.40	+0.9
151,422	-		Sama_0134	0.72	-0.5
151,456	+		Sama_0134	0.78	+0.3
151,457	-		Sama_0134	0.78	-1.0
151,473	+		Sama_0134	0.81	-1.6
151,556	+				+0.5
151,556	+				-1.2
151,556	+				-1.5
151,556	+				-0.5
151,557	-				-0.8
151,557	-				+0.5
151,557	-				-0.1
151,598	+				-0.1
151,598	+				+0.8
151,598	+				-0.7
151,599	-				-0.2
151,599	-				-0.0
151,653	+				-0.2
151,653	+				-1.6
151,653	+				+0.5
151,653	+				-0.9
151,654	-				+0.5
151,654	-				-0.2
151,654	-				-2.5
151,654	-				+0.9
151,674	+		Sama_0135	0.13	-0.5
151,674	+		Sama_0135	0.13	+1.2
151,674	+		Sama_0135	0.13	-1.1
151,674	+		Sama_0135	0.13	+0.0
151,674	+		Sama_0135	0.13	+0.3
151,674	+		Sama_0135	0.13	+0.4
151,675	-		Sama_0135	0.13	-0.7
151,675	-		Sama_0135	0.13	+1.0
151,675	-		Sama_0135	0.13	-0.4
151,675	-		Sama_0135	0.13	+0.0
151,732	-		Sama_0135	0.20	+0.6
151,748	+		Sama_0135	0.23	+0.2
151,748	+		Sama_0135	0.23	+0.1
151,748	+		Sama_0135	0.23	+1.7
151,749	-		Sama_0135	0.23	-0.1
151,749	-		Sama_0135	0.23	+0.0
151,782	+		Sama_0135	0.27	+0.6
151,783	-		Sama_0135	0.27	+0.6
151,794	+		Sama_0135	0.29	-0.1
151,795	-		Sama_0135	0.29	-0.7
151,810	-		Sama_0135	0.31	+1.1
151,878	+		Sama_0135	0.40	+0.8
151,878	+		Sama_0135	0.40	+0.4
151,878	+		Sama_0135	0.40	+1.2
151,878	+		Sama_0135	0.40	+1.1
151,878	+		Sama_0135	0.40	-0.7
151,878	+		Sama_0135	0.40	+0.1
151,879	-		Sama_0135	0.40	-0.3
151,879	-		Sama_0135	0.40	+0.1
151,879	-		Sama_0135	0.40	+1.2
151,879	-		Sama_0135	0.40	-0.5
151,965	-		Sama_0135	0.52	-0.3
151,965	-		Sama_0135	0.52	+0.3
151,965	-		Sama_0135	0.52	+0.0
152,028	+		Sama_0135	0.60	+0.0
152,028	+		Sama_0135	0.60	-0.0
152,028	+		Sama_0135	0.60	-0.4
152,028	+		Sama_0135	0.60	+2.8
152,029	-		Sama_0135	0.60	-0.0
152,029	-		Sama_0135	0.60	+1.1
152,090	+		Sama_0135	0.69	-0.7
152,090	+		Sama_0135	0.69	-0.7
152,090	+		Sama_0135	0.69	+0.4
152,090	+		Sama_0135	0.69	-0.4
152,090	+		Sama_0135	0.69	+1.0
152,090	+		Sama_0135	0.69	+0.2
152,091	-		Sama_0135	0.69	+1.1
152,091	-		Sama_0135	0.69	+0.5
152,091	-		Sama_0135	0.69	-0.2
152,091	-		Sama_0135	0.69	+1.5
152,091	-		Sama_0135	0.69	-0.0
152,091	-		Sama_0135	0.69	-0.4
152,091	-		Sama_0135	0.69	-1.5
152,091	-		Sama_0135	0.69	+0.6
152,227	+		Sama_0135	0.87	-0.0
152,227	+		Sama_0135	0.87	-0.6
152,227	+		Sama_0135	0.87	-0.1
152,228	-		Sama_0135	0.87	+0.3
152,318	+				+2.2
152,354	-				-0.6
152,460	+				+0.5
152,462	+				+0.8
152,462	+				-1.5
152,462	+				+0.6
152,462	+				+0.9
152,463	-				-0.1
152,463	-				+1.1
152,463	-				-0.5
152,518	+				-0.9
152,518	+				-0.5
152,518	+				-0.1
152,519	-				-0.6
152,587	-				+0.2
152,612	+				-0.8
152,612	+				-0.3
152,612	+				+0.1
152,612	+				+0.1
152,612	+				-0.4
152,613	-				+0.0
152,613	-				+0.7
152,642	+				+0.2
152,642	+				-0.4
152,642	+				-0.1
152,642	+				-0.2
152,642	+				-0.2
152,642	+				+0.0
152,642	+				-1.1
152,642	+				-0.0
152,642	+				+1.0
152,642	+				+0.5
152,642	+				+0.0
152,643	-				-1.1
152,643	-				+0.8
152,643	-				+0.0
152,643	-				-0.2
152,643	-				-0.9
152,643	-				+0.9
152,643	-				-0.7
152,687	-				-0.5
152,712	+				-0.4
152,722	+				-0.6
152,722	+				+0.2
152,723	-				+0.1
152,723	-				+0.0
152,723	-				+0.0
152,728	+				+0.8
152,728	+				+1.2
152,728	+				+0.3
152,728	+				+0.2
152,728	+				-1.0
152,729	-				+1.3
152,729	-				-0.0
152,729	-				-0.0
152,729	-				-0.3
152,730	+				+0.9
152,730	+				-1.7
152,730	+				+0.0
152,731	-				+0.6
152,731	-				-2.0
152,731	-				+0.3
152,846	-				+0.4
152,929	+		Sama_0136	0.13	+1.5
152,929	+		Sama_0136	0.13	-0.2
153,101	-		Sama_0136	0.28	-0.1
153,101	-		Sama_0136	0.28	-1.0
153,101	-		Sama_0136	0.28	+0.9
153,111	+		Sama_0136	0.29	+0.6
153,111	+		Sama_0136	0.29	+0.1
153,111	+		Sama_0136	0.29	+0.5
153,111	+		Sama_0136	0.29	-0.0
153,111	+		Sama_0136	0.29	-1.2
153,112	-		Sama_0136	0.29	+0.6
153,112	-		Sama_0136	0.29	-0.4
153,112	-		Sama_0136	0.29	-1.7
153,112	-		Sama_0136	0.29	-0.1
153,112	-		Sama_0136	0.29	-1.8
153,112	-		Sama_0136	0.29	-0.1
153,112	-		Sama_0136	0.29	+0.0
153,147	+		Sama_0136	0.32	+0.2
153,147	+		Sama_0136	0.32	-0.5
153,175	+		Sama_0136	0.34	+1.5
153,175	+		Sama_0136	0.34	+0.7
153,175	+		Sama_0136	0.34	-1.1
153,175	+		Sama_0136	0.34	+0.4
153,176	-		Sama_0136	0.34	-1.7
153,176	-		Sama_0136	0.34	+1.5
153,176	-		Sama_0136	0.34	-0.0
153,176	-		Sama_0136	0.34	+1.0
153,246	-		Sama_0136	0.40	+0.0
153,246	-		Sama_0136	0.40	-0.2
153,270	+		Sama_0136	0.42	-0.1
153,270	+		Sama_0136	0.42	-1.4
153,270	+		Sama_0136	0.42	-0.2
153,271	-		Sama_0136	0.42	+0.3
153,299	+		Sama_0136	0.44	-1.5
153,299	+		Sama_0136	0.44	-0.1
153,299	+		Sama_0136	0.44	-1.3
153,299	+		Sama_0136	0.44	-0.1
153,300	-		Sama_0136	0.44	+0.1
153,300	-		Sama_0136	0.44	-0.9