Strain Fitness in Shewanella oneidensis MR-1 around SOA0031

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSOA0029 and SOA0030 are separated by 70 nucleotidesSOA0030 and SOA0031 are separated by 288 nucleotidesSOA0031 and SOA0032 are separated by 124 nucleotidesSOA0032 and SOA0033 are separated by 1 nucleotides SO_A0028: SO_A0028 - ISSod1, transposase OrfA (NCBI), at 21,138 to 22,297 _A0028 SOA0029: SOA0029 - ISSod1, transposase OrfB (NCBI ptt file), at 21,488 to 22,297 SOA0029 SOA0030: SOA0030 - hypothetical protein (NCBI ptt file), at 22,368 to 22,490 SOA0030 SOA0031: SOA0031 - partition protein, ParB family, putative (NCBI ptt file), at 22,779 to 24,653 SOA0031 SOA0032: SOA0032 - conserved hypothetical protein (NCBI ptt file), at 24,778 to 25,233 SOA0032 SOA0033: SOA0033 - hypothetical protein (NCBI ptt file), at 25,235 to 25,723 SOA0033 Position (kb) 22 23 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 22.286 kb on + strandat 22.291 kb on + strandat 22.291 kb on + strandat 22.296 kb on + strandat 22.296 kb on + strandat 22.296 kb on + strandat 22.301 kb on + strandat 22.345 kb on + strandat 22.356 kb on + strandat 22.366 kb on + strandat 22.366 kb on + strandat 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.518 kb on - strandat 22.552 kb on + strandat 22.563 kb on + strandat 22.587 kb on - strandat 22.628 kb on + strandat 22.636 kb on - strandat 22.636 kb on - strandat 22.638 kb on + strandat 22.642 kb on + strandat 22.650 kb on - strandat 22.680 kb on - strandat 22.797 kb on - strandat 22.852 kb on - strandat 22.863 kb on - strandat 22.908 kb on - strandat 22.924 kb on - strandat 22.935 kb on + strandat 22.982 kb on - strand, within SOA0031at 23.021 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.089 kb on + strand, within SOA0031at 23.089 kb on + strand, within SOA0031at 23.095 kb on + strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.097 kb on - strand, within SOA0031at 23.098 kb on - strand, within SOA0031at 23.098 kb on - strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.108 kb on - strand, within SOA0031at 23.108 kb on - strand, within SOA0031at 23.113 kb on + strand, within SOA0031at 23.121 kb on - strand, within SOA0031at 23.127 kb on - strand, within SOA0031at 23.132 kb on + strand, within SOA0031at 23.132 kb on + strand, within SOA0031at 23.140 kb on - strand, within SOA0031at 23.178 kb on - strand, within SOA0031at 23.189 kb on + strand, within SOA0031at 23.236 kb on - strand, within SOA0031at 23.236 kb on - strand, within SOA0031at 23.243 kb on + strand, within SOA0031at 23.261 kb on + strand, within SOA0031at 23.300 kb on + strand, within SOA0031at 23.317 kb on + strand, within SOA0031at 23.389 kb on + strand, within SOA0031at 23.389 kb on + strand, within SOA0031at 23.394 kb on + strand, within SOA0031at 23.397 kb on - strand, within SOA0031at 23.402 kb on - strand, within SOA0031at 23.402 kb on - strand, within SOA0031at 23.416 kb on - strand, within SOA0031at 23.437 kb on - strand, within SOA0031at 23.439 kb on + strand, within SOA0031at 23.564 kb on + strand, within SOA0031at 23.613 kb on + strand, within SOA0031at 23.613 kb on + strand, within SOA0031at 23.613 kb on + strand, within SOA0031at 23.620 kb on + strand, within SOA0031at 23.620 kb on + strand, within SOA0031at 23.621 kb on - strand, within SOA0031at 23.621 kb on - strand, within SOA0031at 23.625 kb on + strand, within SOA0031at 23.628 kb on - strand, within SOA0031at 23.630 kb on + strand, within SOA0031at 23.637 kb on + strand, within SOA0031at 23.643 kb on - strand, within SOA0031at 23.704 kb on + strand, within SOA0031at 23.739 kb on + strand, within SOA0031at 23.739 kb on + strand, within SOA0031at 23.739 kb on + strand, within SOA0031at 23.739 kb on + strand, within SOA0031at 23.747 kb on - strand, within SOA0031at 23.777 kb on + strand, within SOA0031at 23.815 kb on - strand, within SOA0031at 23.886 kb on + strand, within SOA0031at 23.893 kb on - strand, within SOA0031at 23.987 kb on + strand, within SOA0031at 24.103 kb on - strand, within SOA0031at 24.109 kb on + strand, within SOA0031at 24.109 kb on + strand, within SOA0031at 24.109 kb on + strand, within SOA0031at 24.109 kb on + strand, within SOA0031at 24.109 kb on + strand, within SOA0031at 24.109 kb on + strand, within SOA0031at 24.109 kb on + strand, within SOA0031at 24.117 kb on - strand, within SOA0031at 24.117 kb on - strand, within SOA0031at 24.117 kb on - strand, within SOA0031at 24.117 kb on - strand, within SOA0031at 24.117 kb on - strand, within SOA0031at 24.117 kb on - strand, within SOA0031at 24.160 kb on + strand, within SOA0031at 24.168 kb on - strand, within SOA0031at 24.168 kb on - strand, within SOA0031at 24.221 kb on + strand, within SOA0031at 24.228 kb on - strand, within SOA0031at 24.240 kb on - strand, within SOA0031at 24.287 kb on + strand, within SOA0031at 24.295 kb on - strand, within SOA0031at 24.336 kb on + strand, within SOA0031at 24.348 kb on + strand, within SOA0031at 24.348 kb on + strand, within SOA0031at 24.356 kb on - strand, within SOA0031at 24.356 kb on - strand, within SOA0031at 24.475 kb on + strandat 24.510 kb on + strandat 24.552 kb on - strandat 24.566 kb on + strandat 24.567 kb on + strandat 24.665 kb on - strandat 24.670 kb on + strandat 24.670 kb on + strandat 24.697 kb on - strandat 24.697 kb on - strandat 24.697 kb on - strandat 24.765 kb on - strandat 24.943 kb on + strand, within SOA0032at 24.945 kb on + strand, within SOA0032at 24.951 kb on - strand, within SOA0032at 24.993 kb on + strand, within SOA0032at 25.016 kb on - strand, within SOA0032at 25.030 kb on + strand, within SOA0032at 25.039 kb on - strand, within SOA0032at 25.039 kb on - strand, within SOA0032at 25.046 kb on - strand, within SOA0032at 25.085 kb on - strand, within SOA0032at 25.109 kb on - strand, within SOA0032at 25.111 kb on + strand, within SOA0032at 25.200 kb on + strandat 25.214 kb on + strandat 25.285 kb on + strand, within SOA0033at 25.287 kb on - strand, within SOA0033at 25.328 kb on + strand, within SOA0033at 25.355 kb on + strand, within SOA0033at 25.355 kb on + strand, within SOA0033at 25.394 kb on + strand, within SOA0033at 25.447 kb on + strand, within SOA0033at 25.447 kb on + strand, within SOA0033at 25.510 kb on + strand, within SOA0033at 25.575 kb on - strand, within SOA0033at 25.575 kb on - strand, within SOA0033at 25.575 kb on - strand, within SOA0033at 25.575 kb on - strand, within SOA0033at 25.579 kb on - strand, within SOA0033at 25.579 kb on - strand, within SOA0033at 25.586 kb on + strand, within SOA0033at 25.586 kb on + strand, within SOA0033

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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22,286 + +2.3
22,291 + -0.8
22,291 + +0.7
22,296 + +0.9
22,296 + +0.5
22,296 + -1.5
22,301 + -0.6
22,345 + +0.1
22,356 + +0.7
22,366 + +0.4
22,366 + +0.9
22,381 + SOA0030 0.11 -0.7
22,381 + SOA0030 0.11 -0.9
22,381 + SOA0030 0.11 +1.4
22,381 + SOA0030 0.11 -0.9
22,381 + SOA0030 0.11 +0.6
22,389 - SOA0030 0.17 +1.0
22,389 - SOA0030 0.17 -0.4
22,389 - SOA0030 0.17 -0.2
22,389 - SOA0030 0.17 -1.2
22,389 - SOA0030 0.17 -1.0
22,389 - SOA0030 0.17 -0.7
22,518 - -0.2
22,552 + -0.3
22,563 + -1.4
22,587 - -0.9
22,628 + -1.7
22,636 - -0.1
22,636 - +0.4
22,638 + +0.3
22,642 + -0.8
22,650 - -0.8
22,680 - -0.6
22,797 - +0.4
22,852 - -0.0
22,863 - +1.4
22,908 - -0.0
22,924 - +0.7
22,935 + +1.2
22,982 - SOA0031 0.11 +0.1
23,021 + SOA0031 0.13 +1.0
23,088 + SOA0031 0.16 +0.6
23,088 + SOA0031 0.16 -1.0
23,088 + SOA0031 0.16 +0.7
23,088 + SOA0031 0.16 -0.5
23,088 + SOA0031 0.16 +1.5
23,088 + SOA0031 0.16 -1.1
23,088 + SOA0031 0.16 +0.4
23,088 + SOA0031 0.16 -3.5
23,088 + SOA0031 0.16 -0.8
23,088 + SOA0031 0.16 +0.3
23,088 + SOA0031 0.16 +0.7
23,088 + SOA0031 0.16 +0.8
23,089 + SOA0031 0.17 +0.8
23,089 + SOA0031 0.17 +1.2
23,095 + SOA0031 0.17 -0.9
23,096 - SOA0031 0.17 -1.4
23,096 - SOA0031 0.17 -0.6
23,096 - SOA0031 0.17 -0.1
23,096 - SOA0031 0.17 +0.2
23,097 - SOA0031 0.17 -0.0
23,098 - SOA0031 0.17 -0.4
23,098 - SOA0031 0.17 -0.1
23,100 + SOA0031 0.17 +1.5
23,100 + SOA0031 0.17 +1.1
23,100 + SOA0031 0.17 +0.4
23,100 + SOA0031 0.17 -2.7
23,100 + SOA0031 0.17 +0.0
23,100 + SOA0031 0.17 +0.5
23,100 + SOA0031 0.17 -1.0
23,108 - SOA0031 0.18 +0.2
23,108 - SOA0031 0.18 +0.5
23,113 + SOA0031 0.18 -0.4
23,121 - SOA0031 0.18 -0.9
23,127 - SOA0031 0.19 +0.7
23,132 + SOA0031 0.19 -0.4
23,132 + SOA0031 0.19 -0.7
23,140 - SOA0031 0.19 -0.5
23,178 - SOA0031 0.21 +0.3
23,189 + SOA0031 0.22 +0.9
23,236 - SOA0031 0.24 +1.0
23,236 - SOA0031 0.24 -1.4
23,243 + SOA0031 0.25 -0.1
23,261 + SOA0031 0.26 -0.8
23,300 + SOA0031 0.28 -0.1
23,317 + SOA0031 0.29 +0.8
23,389 + SOA0031 0.33 +0.5
23,389 + SOA0031 0.33 -0.3
23,394 + SOA0031 0.33 -0.8
23,397 - SOA0031 0.33 +0.5
23,402 - SOA0031 0.33 +0.0
23,402 - SOA0031 0.33 -0.0
23,416 - SOA0031 0.34 +1.7
23,437 - SOA0031 0.35 +0.0
23,439 + SOA0031 0.35 -0.7
23,564 + SOA0031 0.42 -0.3
23,613 + SOA0031 0.44 +0.6
23,613 + SOA0031 0.44 +1.6
23,613 + SOA0031 0.44 -0.6
23,620 + SOA0031 0.45 +0.1
23,620 + SOA0031 0.45 -0.3
23,621 - SOA0031 0.45 -0.9
23,621 - SOA0031 0.45 -0.4
23,625 + SOA0031 0.45 -0.1
23,628 - SOA0031 0.45 +0.5
23,630 + SOA0031 0.45 +0.5
23,637 + SOA0031 0.46 +1.3
23,643 - SOA0031 0.46 -0.1
23,704 + SOA0031 0.49 +0.5
23,739 + SOA0031 0.51 +1.4
23,739 + SOA0031 0.51 -0.1
23,739 + SOA0031 0.51 -1.9
23,739 + SOA0031 0.51 +0.1
23,747 - SOA0031 0.52 -0.9
23,777 + SOA0031 0.53 -2.1
23,815 - SOA0031 0.55 -2.2
23,886 + SOA0031 0.59 -0.5
23,893 - SOA0031 0.59 +1.2
23,987 + SOA0031 0.64 +0.3
24,103 - SOA0031 0.71 -1.3
24,109 + SOA0031 0.71 +0.9
24,109 + SOA0031 0.71 -0.4
24,109 + SOA0031 0.71 +1.0
24,109 + SOA0031 0.71 -0.9
24,109 + SOA0031 0.71 +0.3
24,109 + SOA0031 0.71 +0.5
24,109 + SOA0031 0.71 +0.1
24,117 - SOA0031 0.71 -0.2
24,117 - SOA0031 0.71 +0.3
24,117 - SOA0031 0.71 +0.6
24,117 - SOA0031 0.71 +1.0
24,117 - SOA0031 0.71 +0.5
24,117 - SOA0031 0.71 +0.1
24,160 + SOA0031 0.74 +0.3
24,168 - SOA0031 0.74 +3.3
24,168 - SOA0031 0.74 -0.5
24,221 + SOA0031 0.77 +0.3
24,228 - SOA0031 0.77 +0.2
24,240 - SOA0031 0.78 +2.0
24,287 + SOA0031 0.80 +0.2
24,295 - SOA0031 0.81 -0.7
24,336 + SOA0031 0.83 +1.1
24,348 + SOA0031 0.84 -0.6
24,348 + SOA0031 0.84 +0.2
24,356 - SOA0031 0.84 -0.5
24,356 - SOA0031 0.84 +0.6
24,475 + +0.4
24,510 + +0.1
24,552 - -1.4
24,566 + +0.5
24,567 + +0.0
24,665 - +0.1
24,670 + +0.8
24,670 + +0.1
24,697 - +0.6
24,697 - +0.4
24,697 - +0.6
24,765 - +0.6
24,943 + SOA0032 0.36 +0.6
24,945 + SOA0032 0.37 +1.0
24,951 - SOA0032 0.38 -3.1
24,993 + SOA0032 0.47 -0.1
25,016 - SOA0032 0.52 -0.7
25,030 + SOA0032 0.55 -1.0
25,039 - SOA0032 0.57 -2.7
25,039 - SOA0032 0.57 -0.3
25,046 - SOA0032 0.59 -1.2
25,085 - SOA0032 0.67 -0.9
25,109 - SOA0032 0.73 -2.9
25,111 + SOA0032 0.73 -1.9
25,200 + -0.7
25,214 + +0.1
25,285 + SOA0033 0.10 +0.3
25,287 - SOA0033 0.11 -2.0
25,328 + SOA0033 0.19 -0.5
25,355 + SOA0033 0.25 -1.8
25,355 + SOA0033 0.25 +1.1
25,394 + SOA0033 0.33 -2.6
25,447 + SOA0033 0.43 -2.4
25,447 + SOA0033 0.43 -2.1
25,510 + SOA0033 0.56 -2.9
25,575 - SOA0033 0.70 -1.0
25,575 - SOA0033 0.70 -3.6
25,575 - SOA0033 0.70 -2.3
25,575 - SOA0033 0.70 -0.7
25,579 - SOA0033 0.70 -0.3
25,579 - SOA0033 0.70 -2.9
25,586 + SOA0033 0.72 +0.8
25,586 + SOA0033 0.72 -2.6

Or see this region's nucleotide sequence