Strain Fitness in Shewanella oneidensis MR-1 around SO4220

Experiment: Gly-Glu (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmurG and ftsW overlap by 1 nucleotidesftsW and murD overlap by 11 nucleotides SO4219: murG - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (NCBI ptt file), at 4,393,150 to 4,394,238 murG SO4220: ftsW - cell division protein FtsW (NCBI ptt file), at 4,394,238 to 4,395,449 ftsW SO4221: murD - UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI ptt file), at 4,395,439 to 4,396,758 murD Position (kb) 4394 4395 4396Strain fitness (log2 ratio) -1 0 1at 4394.258 kb on - strandat 4394.272 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
remove
4,394,258 - -0.2
4,394,272 - -0.4

Or see this region's nucleotide sequence