Strain Fitness in Shewanella oneidensis MR-1 around SO4098

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmreC and mreB are separated by 44 nucleotidesmreB and mshQ are separated by 342 nucleotides SO4097: mreC - rod shape-determining protein MreC (NCBI ptt file), at 4,255,016 to 4,256,083 mreC SO4098: mreB - rod shape-determining protein MreB (NCBI ptt file), at 4,256,128 to 4,257,177 mreB SO4100: mshQ - MSHA biogenesis protein MshQ (NCBI ptt file), at 4,257,520 to 4,261,293 mshQ Position (kb) 4256 4257 4258Strain fitness (log2 ratio) -1 0 1at 4257.257 kb on - strandat 4257.282 kb on - strandat 4257.441 kb on - strandat 4257.550 kb on + strandat 4257.591 kb on + strandat 4257.601 kb on + strandat 4257.655 kb on + strandat 4257.769 kb on + strandat 4257.810 kb on + strandat 4257.901 kb on - strand, within mshQat 4257.913 kb on - strand, within mshQat 4257.979 kb on + strand, within mshQat 4258.013 kb on + strand, within mshQat 4258.058 kb on - strand, within mshQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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4,257,257 - +0.1
4,257,282 - -0.0
4,257,441 - -1.0
4,257,550 + +1.6
4,257,591 + +0.3
4,257,601 + +0.7
4,257,655 + +0.9
4,257,769 + +0.3
4,257,810 + +0.5
4,257,901 - mshQ SO4100 0.10 -0.0
4,257,913 - mshQ SO4100 0.10 +0.6
4,257,979 + mshQ SO4100 0.12 -0.5
4,258,013 + mshQ SO4100 0.13 -1.6
4,258,058 - mshQ SO4100 0.14 +0.0

Or see this region's nucleotide sequence