Strain Fitness in Shewanella oneidensis MR-1 around SO2897

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntligA and zipA are separated by 98 nucleotideszipA and SO2898 are separated by 26 nucleotides SO2896: ligA - DNA ligase, NAD-dependent (NCBI ptt file), at 3,017,751 to 3,019,820 ligA SO2897: zipA - cell division protein ZipA (NCBI ptt file), at 3,019,919 to 3,020,953 zipA SO2898: SO2898 - SMC family protein (NCBI ptt file), at 3,020,980 to 3,024,417 SO2898 Position (kb) 3019 3020 3021Strain fitness (log2 ratio) -1 0 1 2 3at 3019.899 kb on - strandat 3019.925 kb on - strandat 3020.984 kb on - strandat 3021.133 kb on - strandat 3021.180 kb on - strandat 3021.375 kb on - strand, within SO2898at 3021.579 kb on + strand, within SO2898at 3021.899 kb on - strand, within SO2898

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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3,019,899 - +0.9
3,019,925 - +0.5
3,020,984 - +3.4
3,021,133 - -0.1
3,021,180 - -1.0
3,021,375 - SO2898 0.11 -0.1
3,021,579 + SO2898 0.17 +1.3
3,021,899 - SO2898 0.27 +0.4

Or see this region's nucleotide sequence