Strain Fitness in Shewanella oneidensis MR-1 around SO1167

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1166 and rodA are separated by 16 nucleotidesrodA and mrdA overlap by 19 nucleotides SO1166: SO1166 - membrane-bound lytic transglycosylase, putative (NCBI ptt file), at 1,208,522 to 1,209,586 SO1166 SO1167: rodA - rod shape-determining protein RodA (NCBI ptt file), at 1,209,603 to 1,210,721 rodA SO1168: mrdA - penicillin-binding protein 2 (NCBI ptt file), at 1,210,703 to 1,212,559 mrdA Position (kb) 1209 1210 1211Strain fitness (log2 ratio) -2 -1 0 1at 1208.956 kb on - strand, within SO1166at 1208.963 kb on - strand, within SO1166at 1208.994 kb on + strand, within SO1166at 1209.002 kb on - strand, within SO1166at 1209.032 kb on - strand, within SO1166at 1209.060 kb on - strand, within SO1166at 1209.098 kb on + strand, within SO1166at 1209.106 kb on - strand, within SO1166at 1209.462 kb on - strand, within SO1166at 1209.477 kb on - strand, within SO1166at 1209.495 kb on - strandat 1209.500 kb on - strandat 1209.537 kb on - strandat 1209.628 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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1,208,956 - SO1166 0.41 -1.0
1,208,963 - SO1166 0.41 -0.4
1,208,994 + SO1166 0.44 +0.8
1,209,002 - SO1166 0.45 -2.1
1,209,032 - SO1166 0.48 -0.5
1,209,060 - SO1166 0.51 -0.1
1,209,098 + SO1166 0.54 -0.3
1,209,106 - SO1166 0.55 -1.4
1,209,462 - SO1166 0.88 -1.2
1,209,477 - SO1166 0.90 +0.0
1,209,495 - -1.2
1,209,500 - -0.2
1,209,537 - +0.0
1,209,628 - +0.4

Or see this region's nucleotide sequence