Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0778 and gcvT are separated by 398 nucleotides gcvT and gcvH are separated by 25 nucleotides gcvH and gcvP are separated by 122 nucleotides
SO0778: SO0778 - oxidoreductase, FAD-binding, UbiH/Coq6 family (NCBI ptt file), at 790,275 to 791,498
SO0778
SO0779: gcvT - glycine cleavage system T protein (NCBI ptt file), at 791,897 to 792,991
gcvT
SO0780: gcvH - glycine cleavage system H protein (NCBI ptt file), at 793,017 to 793,406
gcvH
SO0781: gcvP - glycine cleavage system P protein (NCBI ptt file), at 793,529 to 796,417
gcvP
Position (kb) 791
792
793 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 791.505 kb on - strand at 791.699 kb on - strand at 791.732 kb on - strand at 791.739 kb on + strand at 791.848 kb on + strand at 791.848 kb on + strand at 791.856 kb on - strand at 791.857 kb on - strand at 791.860 kb on + strand at 791.861 kb on - strand at 791.868 kb on - strand at 791.868 kb on - strand at 791.868 kb on - strand at 791.964 kb on + strand at 791.972 kb on - strand at 792.012 kb on - strand, within gcvT at 792.067 kb on + strand, within gcvT at 792.143 kb on + strand, within gcvT at 792.151 kb on - strand, within gcvT at 792.151 kb on - strand, within gcvT at 792.230 kb on + strand, within gcvT at 792.230 kb on + strand, within gcvT at 792.238 kb on - strand, within gcvT at 792.238 kb on - strand, within gcvT at 792.238 kb on - strand, within gcvT at 792.288 kb on + strand, within gcvT at 792.363 kb on - strand, within gcvT at 792.415 kb on - strand, within gcvT at 792.458 kb on + strand, within gcvT at 792.475 kb on - strand, within gcvT at 792.535 kb on - strand, within gcvT at 792.540 kb on + strand, within gcvT at 792.540 kb on + strand, within gcvT at 792.554 kb on + strand, within gcvT at 792.590 kb on + strand, within gcvT at 792.598 kb on - strand, within gcvT at 792.667 kb on + strand, within gcvT at 792.810 kb on + strand, within gcvT at 792.855 kb on + strand, within gcvT at 792.945 kb on + strand at 793.082 kb on - strand, within gcvH at 793.093 kb on - strand, within gcvH at 793.105 kb on - strand, within gcvH at 793.115 kb on - strand, within gcvH at 793.179 kb on + strand, within gcvH at 793.187 kb on - strand, within gcvH at 793.248 kb on - strand, within gcvH at 793.259 kb on + strand, within gcvH at 793.262 kb on - strand, within gcvH at 793.277 kb on - strand, within gcvH at 793.287 kb on - strand, within gcvH at 793.353 kb on + strand, within gcvH at 793.536 kb on + strand at 793.544 kb on - strand at 793.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 791,505 - -0.3 791,699 - -3.1 791,732 - -4.2 791,739 + -3.6 791,848 + -4.1 791,848 + -1.2 791,856 - -2.5 791,857 - -3.2 791,860 + -3.7 791,861 - -2.1 791,868 - -4.2 791,868 - -3.7 791,868 - -1.2 791,964 + -2.9 791,972 - -3.4 792,012 - gcvT SO0779 0.11 -3.8 792,067 + gcvT SO0779 0.16 -2.1 792,143 + gcvT SO0779 0.22 -4.2 792,151 - gcvT SO0779 0.23 -2.6 792,151 - gcvT SO0779 0.23 -2.1 792,230 + gcvT SO0779 0.30 -3.1 792,230 + gcvT SO0779 0.30 -3.0 792,238 - gcvT SO0779 0.31 -3.5 792,238 - gcvT SO0779 0.31 -3.9 792,238 - gcvT SO0779 0.31 -2.3 792,288 + gcvT SO0779 0.36 -1.9 792,363 - gcvT SO0779 0.43 -3.7 792,415 - gcvT SO0779 0.47 -1.7 792,458 + gcvT SO0779 0.51 -2.7 792,475 - gcvT SO0779 0.53 -3.2 792,535 - gcvT SO0779 0.58 -6.5 792,540 + gcvT SO0779 0.59 -4.0 792,540 + gcvT SO0779 0.59 -3.3 792,554 + gcvT SO0779 0.60 -4.0 792,590 + gcvT SO0779 0.63 -1.2 792,598 - gcvT SO0779 0.64 -3.9 792,667 + gcvT SO0779 0.70 -1.3 792,810 + gcvT SO0779 0.83 -5.5 792,855 + gcvT SO0779 0.87 -3.2 792,945 + -3.5 793,082 - gcvH SO0780 0.17 -5.5 793,093 - gcvH SO0780 0.19 -2.3 793,105 - gcvH SO0780 0.23 -3.3 793,115 - gcvH SO0780 0.25 -2.2 793,179 + gcvH SO0780 0.42 -3.5 793,187 - gcvH SO0780 0.44 -4.2 793,248 - gcvH SO0780 0.59 -2.3 793,259 + gcvH SO0780 0.62 -2.7 793,262 - gcvH SO0780 0.63 -2.1 793,277 - gcvH SO0780 0.67 -1.5 793,287 - gcvH SO0780 0.69 -0.9 793,353 + gcvH SO0780 0.86 -1.7 793,536 + -2.2 793,544 - -0.9 793,694 + -5.3
Or see this region's nucleotide sequence