Strain Fitness in Shewanella oneidensis MR-1 around SO0742

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntggt-1 and SO0742 are separated by 217 nucleotidesSO0742 and SO0743 overlap by 4 nucleotides SO0741: ggt-1 - gamma-glutamyltranspeptidase (NCBI ptt file), at 757,617 to 759,254 ggt-1 SO0742: SO0742 - iron(III) ABC transporter, ATP-binding protein (NCBI ptt file), at 759,472 to 760,521 SO0742 SO0743: SO0743 - iron(III) ABC transporter, permease protein (NCBI ptt file), at 760,518 to 762,152 SO0743 Position (kb) 759 760 761Strain fitness (log2 ratio) -2 -1 0 1 2at 758.484 kb on + strand, within ggt-1at 758.492 kb on - strand, within ggt-1at 758.574 kb on + strand, within ggt-1at 758.581 kb on + strand, within ggt-1at 758.582 kb on - strand, within ggt-1at 758.583 kb on - strand, within ggt-1at 758.771 kb on + strand, within ggt-1at 758.779 kb on - strand, within ggt-1at 758.849 kb on - strand, within ggt-1at 758.909 kb on + strand, within ggt-1at 758.964 kb on - strand, within ggt-1at 758.979 kb on + strand, within ggt-1at 759.002 kb on + strand, within ggt-1at 759.009 kb on - strand, within ggt-1at 759.010 kb on - strand, within ggt-1at 759.026 kb on + strand, within ggt-1at 759.032 kb on - strand, within ggt-1at 759.034 kb on - strand, within ggt-1at 759.093 kb on - strandat 759.103 kb on - strandat 759.183 kb on - strandat 759.231 kb on + strandat 759.231 kb on + strandat 759.263 kb on - strandat 759.506 kb on + strandat 759.516 kb on - strandat 759.530 kb on + strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.566 kb on - strandat 759.843 kb on - strand, within SO0742at 759.845 kb on + strand, within SO0742at 759.853 kb on - strand, within SO0742at 759.877 kb on + strand, within SO0742at 759.886 kb on - strand, within SO0742at 759.923 kb on + strand, within SO0742at 759.930 kb on - strand, within SO0742at 759.959 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.977 kb on - strand, within SO0742at 759.977 kb on - strand, within SO0742at 759.977 kb on - strand, within SO0742at 759.977 kb on - strand, within SO0742at 760.114 kb on - strand, within SO0742at 760.114 kb on - strand, within SO0742at 760.114 kb on - strand, within SO0742at 760.127 kb on + strand, within SO0742at 760.129 kb on - strand, within SO0742at 760.132 kb on + strand, within SO0742at 760.177 kb on + strand, within SO0742at 760.178 kb on + strand, within SO0742at 760.178 kb on + strand, within SO0742at 760.186 kb on - strand, within SO0742at 760.201 kb on - strand, within SO0742at 760.208 kb on + strand, within SO0742at 760.259 kb on - strand, within SO0742at 760.259 kb on - strand, within SO0742at 760.259 kb on - strand, within SO0742at 760.285 kb on - strand, within SO0742at 760.295 kb on - strand, within SO0742at 760.376 kb on + strand, within SO0742at 760.404 kb on + strand, within SO0742at 760.412 kb on - strand, within SO0742at 760.663 kb on + strandat 760.671 kb on - strandat 760.776 kb on - strand, within SO0743at 760.776 kb on - strand, within SO0743at 760.796 kb on - strand, within SO0743at 760.799 kb on + strand, within SO0743at 760.799 kb on + strand, within SO0743at 760.799 kb on + strand, within SO0743at 760.807 kb on - strand, within SO0743at 760.807 kb on - strand, within SO0743at 760.814 kb on + strand, within SO0743at 760.822 kb on - strand, within SO0743at 760.822 kb on - strand, within SO0743at 760.853 kb on - strand, within SO0743at 760.853 kb on - strand, within SO0743at 760.928 kb on + strand, within SO0743at 760.928 kb on + strand, within SO0743at 760.928 kb on + strand, within SO0743at 760.936 kb on - strand, within SO0743at 760.937 kb on - strand, within SO0743at 760.985 kb on + strand, within SO0743at 760.985 kb on + strand, within SO0743at 760.993 kb on - strand, within SO0743at 760.993 kb on - strand, within SO0743at 760.993 kb on - strand, within SO0743at 760.993 kb on - strand, within SO0743at 760.998 kb on + strand, within SO0743at 761.006 kb on - strand, within SO0743at 761.015 kb on + strandat 761.023 kb on - strandat 761.075 kb on + strand, within SO0743at 761.083 kb on - strand, within SO0743at 761.108 kb on - strand, within SO0743at 761.152 kb on - strand, within SO0743at 761.186 kb on + strand, within SO0743at 761.194 kb on - strand, within SO0743at 761.198 kb on + strand, within SO0743at 761.291 kb on + strand, within SO0743at 761.291 kb on + strand, within SO0743at 761.310 kb on - strand, within SO0743at 761.383 kb on + strand, within SO0743at 761.419 kb on + strand, within SO0743at 761.419 kb on + strand, within SO0743at 761.419 kb on + strand, within SO0743at 761.427 kb on - strand, within SO0743at 761.472 kb on - strand, within SO0743at 761.481 kb on + strand, within SO0743

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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758,484 + ggt-1 SO0741 0.53 -0.9
758,492 - ggt-1 SO0741 0.53 -0.2
758,574 + ggt-1 SO0741 0.58 +0.3
758,581 + ggt-1 SO0741 0.59 +0.0
758,582 - ggt-1 SO0741 0.59 -1.7
758,583 - ggt-1 SO0741 0.59 +0.3
758,771 + ggt-1 SO0741 0.70 +0.4
758,779 - ggt-1 SO0741 0.71 -0.5
758,849 - ggt-1 SO0741 0.75 +0.0
758,909 + ggt-1 SO0741 0.79 +0.5
758,964 - ggt-1 SO0741 0.82 -0.7
758,979 + ggt-1 SO0741 0.83 +1.1
759,002 + ggt-1 SO0741 0.85 -0.6
759,009 - ggt-1 SO0741 0.85 +0.5
759,010 - ggt-1 SO0741 0.85 -0.1
759,026 + ggt-1 SO0741 0.86 -0.4
759,032 - ggt-1 SO0741 0.86 -0.1
759,034 - ggt-1 SO0741 0.87 -0.4
759,093 - -0.1
759,103 - -0.1
759,183 - -0.6
759,231 + +0.3
759,231 + +0.8
759,263 - -0.9
759,506 + -0.0
759,516 - +0.8
759,530 + -0.5
759,538 - -0.6
759,538 - +0.4
759,538 - -1.6
759,538 - -0.1
759,538 - -0.2
759,538 - +0.6
759,566 - -0.9
759,843 - SO0742 0.35 +0.8
759,845 + SO0742 0.36 +1.5
759,853 - SO0742 0.36 +0.3
759,877 + SO0742 0.39 -0.2
759,886 - SO0742 0.39 -0.6
759,923 + SO0742 0.43 +1.6
759,930 - SO0742 0.44 -1.7
759,959 + SO0742 0.46 +0.3
759,969 + SO0742 0.47 -0.4
759,969 + SO0742 0.47 +1.0
759,969 + SO0742 0.47 +0.2
759,969 + SO0742 0.47 +0.7
759,969 + SO0742 0.47 +0.1
759,969 + SO0742 0.47 +0.8
759,969 + SO0742 0.47 +0.1
759,977 - SO0742 0.48 +1.4
759,977 - SO0742 0.48 +1.3
759,977 - SO0742 0.48 +0.1
759,977 - SO0742 0.48 -0.9
760,114 - SO0742 0.61 -1.3
760,114 - SO0742 0.61 +2.0
760,114 - SO0742 0.61 +0.3
760,127 + SO0742 0.62 -0.1
760,129 - SO0742 0.63 +0.4
760,132 + SO0742 0.63 -1.7
760,177 + SO0742 0.67 -0.3
760,178 + SO0742 0.67 -0.4
760,178 + SO0742 0.67 +0.8
760,186 - SO0742 0.68 +0.7
760,201 - SO0742 0.69 -0.3
760,208 + SO0742 0.70 -0.2
760,259 - SO0742 0.75 +0.3
760,259 - SO0742 0.75 +0.1
760,259 - SO0742 0.75 -1.3
760,285 - SO0742 0.77 -0.5
760,295 - SO0742 0.78 -0.5
760,376 + SO0742 0.86 +1.0
760,404 + SO0742 0.89 +0.9
760,412 - SO0742 0.90 +0.5
760,663 + +0.6
760,671 - -1.5
760,776 - SO0743 0.16 +0.2
760,776 - SO0743 0.16 -0.3
760,796 - SO0743 0.17 +0.2
760,799 + SO0743 0.17 -0.0
760,799 + SO0743 0.17 -0.5
760,799 + SO0743 0.17 +0.6
760,807 - SO0743 0.18 -0.9
760,807 - SO0743 0.18 -1.5
760,814 + SO0743 0.18 +0.8
760,822 - SO0743 0.19 +0.4
760,822 - SO0743 0.19 +0.3
760,853 - SO0743 0.20 -0.0
760,853 - SO0743 0.20 -0.1
760,928 + SO0743 0.25 +0.2
760,928 + SO0743 0.25 -0.3
760,928 + SO0743 0.25 +0.5
760,936 - SO0743 0.26 -0.0
760,937 - SO0743 0.26 +0.9
760,985 + SO0743 0.29 +0.1
760,985 + SO0743 0.29 -0.7
760,993 - SO0743 0.29 -0.2
760,993 - SO0743 0.29 +0.7
760,993 - SO0743 0.29 -0.6
760,993 - SO0743 0.29 -0.4
760,998 + SO0743 0.29 -0.4
761,006 - SO0743 0.30 +1.0
761,015 + +2.1
761,023 - +0.7
761,075 + SO0743 0.34 +0.3
761,083 - SO0743 0.35 +0.1
761,108 - SO0743 0.36 +0.7
761,152 - SO0743 0.39 +0.3
761,186 + SO0743 0.41 +0.1
761,194 - SO0743 0.41 -0.8
761,198 + SO0743 0.42 -0.1
761,291 + SO0743 0.47 -0.3
761,291 + SO0743 0.47 -1.0
761,310 - SO0743 0.48 -0.7
761,383 + SO0743 0.53 +0.4
761,419 + SO0743 0.55 +0.6
761,419 + SO0743 0.55 -0.3
761,419 + SO0743 0.55 +1.5
761,427 - SO0743 0.56 -0.3
761,472 - SO0743 0.58 -1.8
761,481 + SO0743 0.59 +1.2

Or see this region's nucleotide sequence