Strain Fitness in Shewanella oneidensis MR-1 around SO0719

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0717 and SO0718 are separated by 94 nucleotidesSO0718 and SO0719 are separated by 140 nucleotidesSO0719 and SO0720 are separated by 227 nucleotidesSO0720 and SO0721 are separated by 192 nucleotides SO0717: SO0717 - monoheme cytochrome c (NCBI ptt file), at 733,352 to 733,687 SO0717 SO0718: SO0718 - conserved hypothetical protein (NCBI ptt file), at 733,782 to 734,261 SO0718 SO0719: SO0719 - TonB-dependent receptor, putative (NCBI ptt file), at 734,402 to 736,645 SO0719 SO0720: SO0720 - hypothetical protein (NCBI ptt file), at 736,873 to 737,382 SO0720 SO0721: SO0721 - conserved hypothetical protein (NCBI ptt file), at 737,575 to 737,826 SO0721 Position (kb) 734 735 736 737Strain fitness (log2 ratio) -2 -1 0 1 2at 733.450 kb on + strand, within SO0717at 733.457 kb on + strand, within SO0717at 733.468 kb on - strand, within SO0717at 733.571 kb on + strand, within SO0717at 733.603 kb on + strand, within SO0717at 733.645 kb on + strand, within SO0717at 733.645 kb on + strand, within SO0717at 733.645 kb on + strand, within SO0717at 733.653 kb on - strand, within SO0717at 733.655 kb on + strandat 733.655 kb on + strandat 733.677 kb on + strandat 733.750 kb on - strandat 733.855 kb on + strand, within SO0718at 733.900 kb on - strand, within SO0718at 733.909 kb on + strand, within SO0718at 733.919 kb on + strand, within SO0718at 733.919 kb on + strand, within SO0718at 733.927 kb on - strand, within SO0718at 733.927 kb on - strand, within SO0718at 733.927 kb on - strand, within SO0718at 733.975 kb on + strand, within SO0718at 733.975 kb on + strand, within SO0718at 733.977 kb on + strand, within SO0718at 733.985 kb on - strand, within SO0718at 733.994 kb on + strand, within SO0718at 734.081 kb on + strand, within SO0718at 734.089 kb on - strand, within SO0718at 734.106 kb on - strand, within SO0718at 734.106 kb on - strand, within SO0718at 734.137 kb on + strand, within SO0718at 734.189 kb on + strand, within SO0718at 734.191 kb on + strand, within SO0718at 734.201 kb on + strand, within SO0718at 734.234 kb on + strandat 734.234 kb on + strandat 734.234 kb on + strandat 734.234 kb on + strandat 734.236 kb on + strandat 734.271 kb on - strandat 734.290 kb on - strandat 734.323 kb on + strandat 734.323 kb on + strandat 734.331 kb on - strandat 734.331 kb on - strandat 734.331 kb on - strandat 734.433 kb on - strandat 734.450 kb on - strandat 734.475 kb on + strandat 734.595 kb on - strandat 734.608 kb on - strandat 734.624 kb on + strandat 734.624 kb on + strandat 734.632 kb on - strand, within SO0719at 734.632 kb on - strand, within SO0719at 734.729 kb on + strand, within SO0719at 734.729 kb on + strand, within SO0719at 734.729 kb on + strandat 734.729 kb on + strand, within SO0719at 734.729 kb on + strand, within SO0719at 734.729 kb on + strand, within SO0719at 734.729 kb on + strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.737 kb on - strand, within SO0719at 734.796 kb on + strand, within SO0719at 734.806 kb on + strand, within SO0719at 734.814 kb on - strand, within SO0719at 734.900 kb on + strand, within SO0719at 734.901 kb on + strand, within SO0719at 734.909 kb on - strand, within SO0719at 734.913 kb on + strand, within SO0719at 735.010 kb on - strand, within SO0719at 735.164 kb on + strand, within SO0719at 735.179 kb on - strand, within SO0719at 735.198 kb on + strand, within SO0719at 735.215 kb on + strand, within SO0719at 735.246 kb on - strand, within SO0719at 735.291 kb on - strand, within SO0719at 735.291 kb on - strand, within SO0719at 735.291 kb on - strand, within SO0719at 735.320 kb on + strand, within SO0719at 735.349 kb on + strand, within SO0719at 735.357 kb on - strand, within SO0719at 735.405 kb on + strand, within SO0719at 735.413 kb on - strand, within SO0719at 735.413 kb on - strand, within SO0719at 735.478 kb on - strand, within SO0719at 735.554 kb on + strand, within SO0719at 735.612 kb on + strand, within SO0719at 735.617 kb on + strand, within SO0719at 735.617 kb on + strand, within SO0719at 735.715 kb on + strand, within SO0719at 735.795 kb on + strand, within SO0719at 735.882 kb on - strand, within SO0719at 735.905 kb on + strand, within SO0719at 735.910 kb on + strand, within SO0719at 735.915 kb on + strand, within SO0719at 735.918 kb on - strand, within SO0719at 735.923 kb on - strand, within SO0719at 735.928 kb on - strand, within SO0719at 735.983 kb on - strand, within SO0719at 736.022 kb on - strand, within SO0719at 736.024 kb on + strand, within SO0719at 736.172 kb on + strand, within SO0719at 736.195 kb on - strand, within SO0719at 736.202 kb on + strand, within SO0719at 736.303 kb on - strand, within SO0719at 736.500 kb on - strandat 736.500 kb on - strandat 736.508 kb on - strandat 736.652 kb on + strandat 736.760 kb on + strandat 736.800 kb on + strandat 736.824 kb on + strandat 736.867 kb on - strandat 736.897 kb on + strandat 736.905 kb on - strandat 737.006 kb on - strand, within SO0720at 737.234 kb on - strand, within SO0720at 737.258 kb on - strand, within SO0720at 737.258 kb on - strand, within SO0720at 737.277 kb on - strand, within SO0720at 737.282 kb on + strand, within SO0720at 737.285 kb on - strand, within SO0720at 737.319 kb on + strand, within SO0720at 737.421 kb on - strandat 737.426 kb on - strandat 737.444 kb on - strandat 737.451 kb on - strandat 737.461 kb on - strandat 737.517 kb on - strandat 737.617 kb on + strand, within SO0721at 737.617 kb on + strand, within SO0721at 737.642 kb on + strand, within SO0721

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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733,450 + SO0717 0.29 -0.2
733,457 + SO0717 0.31 +0.5
733,468 - SO0717 0.35 +0.1
733,571 + SO0717 0.65 -0.2
733,603 + SO0717 0.75 +0.3
733,645 + SO0717 0.87 -0.8
733,645 + SO0717 0.87 +0.3
733,645 + SO0717 0.87 +0.3
733,653 - SO0717 0.90 -0.1
733,655 + +0.7
733,655 + +1.6
733,677 + -0.3
733,750 - -1.9
733,855 + SO0718 0.15 +0.1
733,900 - SO0718 0.25 +1.2
733,909 + SO0718 0.26 -1.0
733,919 + SO0718 0.29 -0.1
733,919 + SO0718 0.29 -0.5
733,927 - SO0718 0.30 -1.8
733,927 - SO0718 0.30 -0.9
733,927 - SO0718 0.30 -0.0
733,975 + SO0718 0.40 +0.3
733,975 + SO0718 0.40 +0.4
733,977 + SO0718 0.41 +0.5
733,985 - SO0718 0.42 +0.1
733,994 + SO0718 0.44 +0.2
734,081 + SO0718 0.62 -0.2
734,089 - SO0718 0.64 -0.1
734,106 - SO0718 0.68 +0.8
734,106 - SO0718 0.68 +0.8
734,137 + SO0718 0.74 -0.4
734,189 + SO0718 0.85 +0.1
734,191 + SO0718 0.85 +0.8
734,201 + SO0718 0.87 +0.1
734,234 + +0.7
734,234 + +0.1
734,234 + -0.7
734,234 + -1.0
734,236 + +0.7
734,271 - +0.5
734,290 - +0.6
734,323 + -1.7
734,323 + +0.7
734,331 - +0.4
734,331 - -1.1
734,331 - -0.0
734,433 - +0.6
734,450 - -0.4
734,475 + +1.6
734,595 - -0.0
734,608 - +0.1
734,624 + +1.1
734,624 + -0.3
734,632 - SO0719 0.10 +0.0
734,632 - SO0719 0.10 -0.3
734,729 + SO0719 0.15 -0.7
734,729 + SO0719 0.15 +0.3
734,729 + +1.1
734,729 + SO0719 0.15 +0.6
734,729 + SO0719 0.15 +0.4
734,729 + SO0719 0.15 +1.1
734,729 + SO0719 0.15 +0.5
734,737 - SO0719 0.15 +0.6
734,737 - SO0719 0.15 +0.4
734,737 - SO0719 0.15 -0.2
734,737 - SO0719 0.15 -0.5
734,737 - SO0719 0.15 +0.6
734,737 - SO0719 0.15 +0.5
734,737 - SO0719 0.15 +0.4
734,796 + SO0719 0.18 +1.0
734,806 + SO0719 0.18 -1.4
734,814 - SO0719 0.18 +0.2
734,900 + SO0719 0.22 +0.4
734,901 + SO0719 0.22 +0.9
734,909 - SO0719 0.23 +1.3
734,913 + SO0719 0.23 +0.3
735,010 - SO0719 0.27 +0.3
735,164 + SO0719 0.34 +0.4
735,179 - SO0719 0.35 +1.5
735,198 + SO0719 0.35 +1.4
735,215 + SO0719 0.36 +1.0
735,246 - SO0719 0.38 -0.1
735,291 - SO0719 0.40 -0.0
735,291 - SO0719 0.40 +0.7
735,291 - SO0719 0.40 -0.1
735,320 + SO0719 0.41 -0.7
735,349 + SO0719 0.42 +0.3
735,357 - SO0719 0.43 +0.3
735,405 + SO0719 0.45 +0.2
735,413 - SO0719 0.45 -0.0
735,413 - SO0719 0.45 +1.8
735,478 - SO0719 0.48 +0.5
735,554 + SO0719 0.51 +0.4
735,612 + SO0719 0.54 -0.3
735,617 + SO0719 0.54 +0.5
735,617 + SO0719 0.54 +0.5
735,715 + SO0719 0.59 +0.6
735,795 + SO0719 0.62 +0.4
735,882 - SO0719 0.66 +0.4
735,905 + SO0719 0.67 +1.2
735,910 + SO0719 0.67 +0.4
735,915 + SO0719 0.67 -0.5
735,918 - SO0719 0.68 +0.6
735,923 - SO0719 0.68 +1.3
735,928 - SO0719 0.68 +1.2
735,983 - SO0719 0.70 -0.2
736,022 - SO0719 0.72 +0.8
736,024 + SO0719 0.72 +0.4
736,172 + SO0719 0.79 +0.6
736,195 - SO0719 0.80 -2.5
736,202 + SO0719 0.80 +0.7
736,303 - SO0719 0.85 -0.3
736,500 - +0.3
736,500 - +0.7
736,508 - -1.3
736,652 + +0.5
736,760 + +0.4
736,800 + -0.3
736,824 + +1.0
736,867 - +0.4
736,897 + -1.4
736,905 - +2.3
737,006 - SO0720 0.26 -1.5
737,234 - SO0720 0.71 -0.3
737,258 - SO0720 0.75 -0.3
737,258 - SO0720 0.75 -1.0
737,277 - SO0720 0.79 +0.3
737,282 + SO0720 0.80 +0.2
737,285 - SO0720 0.81 +0.2
737,319 + SO0720 0.87 +1.1
737,421 - -0.3
737,426 - +0.9
737,444 - -0.2
737,451 - -1.9
737,461 - -0.6
737,517 - -0.3
737,617 + SO0721 0.17 -0.3
737,617 + SO0721 0.17 +0.2
737,642 + SO0721 0.27 +0.1

Or see this region's nucleotide sequence