Experiment: marine broth pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08700 and PGA1_c08710 are separated by 3 nucleotides PGA1_c08710 and PGA1_c08720 overlap by 4 nucleotides PGA1_c08720 and PGA1_c08730 are separated by 74 nucleotides PGA1_c08730 and PGA1_c08740 are separated by 113 nucleotides
PGA1_c08700: PGA1_c08700 - hypothetical protein, at 896,851 to 897,450
_c08700
PGA1_c08710: PGA1_c08710 - TadE-like protein., at 897,454 to 898,014
_c08710
PGA1_c08720: PGA1_c08720 - hypothetical protein, at 898,011 to 899,693
_c08720
PGA1_c08730: PGA1_c08730 - hypothetical protein, at 899,768 to 899,938
_c08730
PGA1_c08740: PGA1_c08740 - glutamate dehydrogenase GluD, at 900,052 to 901,482
_c08740
Position (kb) 898
899
900 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 897.064 kb on - strand, within PGA1_c08700 at 897.066 kb on + strand, within PGA1_c08700 at 897.094 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.128 kb on - strand, within PGA1_c08700 at 897.152 kb on - strand, within PGA1_c08700 at 897.246 kb on + strand, within PGA1_c08700 at 897.246 kb on + strand, within PGA1_c08700 at 897.270 kb on + strand, within PGA1_c08700 at 897.278 kb on - strand, within PGA1_c08700 at 897.280 kb on + strand, within PGA1_c08700 at 897.280 kb on + strand, within PGA1_c08700 at 897.394 kb on - strand at 897.419 kb on + strand at 897.427 kb on - strand at 897.475 kb on + strand at 897.631 kb on - strand, within PGA1_c08710 at 897.640 kb on - strand, within PGA1_c08710 at 897.641 kb on - strand, within PGA1_c08710 at 897.660 kb on - strand, within PGA1_c08710 at 897.694 kb on - strand, within PGA1_c08710 at 897.694 kb on - strand, within PGA1_c08710 at 897.733 kb on + strand, within PGA1_c08710 at 897.741 kb on - strand, within PGA1_c08710 at 897.741 kb on - strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.868 kb on - strand, within PGA1_c08710 at 897.870 kb on + strand, within PGA1_c08710 at 897.870 kb on + strand, within PGA1_c08710 at 897.878 kb on + strand, within PGA1_c08710 at 897.878 kb on + strand, within PGA1_c08710 at 897.878 kb on - strand, within PGA1_c08710 at 897.886 kb on - strand, within PGA1_c08710 at 897.886 kb on - strand, within PGA1_c08710 at 897.901 kb on + strand, within PGA1_c08710 at 897.950 kb on - strand, within PGA1_c08710 at 897.968 kb on - strand at 898.070 kb on + strand at 898.078 kb on - strand at 898.078 kb on - strand at 898.119 kb on - strand at 898.127 kb on - strand at 898.149 kb on + strand at 898.161 kb on + strand at 898.192 kb on + strand, within PGA1_c08720 at 898.220 kb on + strand, within PGA1_c08720 at 898.259 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.388 kb on + strand, within PGA1_c08720 at 898.429 kb on - strand, within PGA1_c08720 at 898.431 kb on + strand, within PGA1_c08720 at 898.438 kb on + strand, within PGA1_c08720 at 898.451 kb on + strand, within PGA1_c08720 at 898.451 kb on - strand, within PGA1_c08720 at 898.456 kb on - strand, within PGA1_c08720 at 898.456 kb on - strand, within PGA1_c08720 at 898.547 kb on - strand, within PGA1_c08720 at 898.550 kb on - strand, within PGA1_c08720 at 898.579 kb on - strand, within PGA1_c08720 at 898.622 kb on + strand, within PGA1_c08720 at 898.635 kb on - strand, within PGA1_c08720 at 898.655 kb on + strand, within PGA1_c08720 at 898.730 kb on + strand, within PGA1_c08720 at 898.735 kb on + strand, within PGA1_c08720 at 898.735 kb on + strand, within PGA1_c08720 at 898.778 kb on + strand, within PGA1_c08720 at 898.793 kb on + strand, within PGA1_c08720 at 898.900 kb on - strand, within PGA1_c08720 at 898.952 kb on + strand, within PGA1_c08720 at 898.960 kb on + strand, within PGA1_c08720 at 898.960 kb on + strand, within PGA1_c08720 at 898.960 kb on - strand, within PGA1_c08720 at 898.968 kb on - strand, within PGA1_c08720 at 898.968 kb on - strand, within PGA1_c08720 at 898.970 kb on + strand, within PGA1_c08720 at 899.018 kb on - strand, within PGA1_c08720 at 899.018 kb on - strand, within PGA1_c08720 at 899.035 kb on + strand, within PGA1_c08720 at 899.035 kb on + strand, within PGA1_c08720 at 899.035 kb on + strand, within PGA1_c08720 at 899.035 kb on + strand, within PGA1_c08720 at 899.035 kb on + strand, within PGA1_c08720 at 899.040 kb on + strand, within PGA1_c08720 at 899.043 kb on - strand, within PGA1_c08720 at 899.043 kb on - strand, within PGA1_c08720 at 899.043 kb on - strand, within PGA1_c08720 at 899.043 kb on - strand, within PGA1_c08720 at 899.048 kb on - strand, within PGA1_c08720 at 899.067 kb on + strand, within PGA1_c08720 at 899.072 kb on + strand, within PGA1_c08720 at 899.073 kb on - strand, within PGA1_c08720 at 899.075 kb on + strand, within PGA1_c08720 at 899.075 kb on + strand, within PGA1_c08720 at 899.080 kb on - strand, within PGA1_c08720 at 899.083 kb on - strand, within PGA1_c08720 at 899.109 kb on + strand, within PGA1_c08720 at 899.158 kb on + strand, within PGA1_c08720 at 899.265 kb on - strand, within PGA1_c08720 at 899.274 kb on + strand, within PGA1_c08720 at 899.276 kb on + strand, within PGA1_c08720 at 899.277 kb on - strand, within PGA1_c08720 at 899.321 kb on + strand, within PGA1_c08720 at 899.399 kb on + strand, within PGA1_c08720 at 899.409 kb on + strand, within PGA1_c08720 at 899.417 kb on - strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.465 kb on - strand, within PGA1_c08720 at 899.465 kb on - strand, within PGA1_c08720 at 899.471 kb on + strand, within PGA1_c08720 at 899.480 kb on - strand, within PGA1_c08720 at 899.484 kb on - strand, within PGA1_c08720 at 899.502 kb on - strand, within PGA1_c08720 at 899.504 kb on + strand, within PGA1_c08720 at 899.514 kb on + strand, within PGA1_c08720 at 899.522 kb on - strand, within PGA1_c08720 at 899.548 kb on + strand at 899.555 kb on + strand at 899.580 kb on - strand at 899.580 kb on - strand at 899.585 kb on + strand at 899.626 kb on + strand at 899.644 kb on + strand at 899.647 kb on - strand at 899.649 kb on + strand at 899.649 kb on + strand at 899.657 kb on - strand at 899.657 kb on - strand at 899.689 kb on + strand at 899.711 kb on + strand at 899.717 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.724 kb on + strand at 899.725 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.732 kb on - strand at 899.755 kb on + strand at 899.756 kb on + strand at 899.756 kb on + strand at 899.764 kb on - strand at 899.764 kb on - strand at 899.764 kb on - strand at 899.795 kb on - strand, within PGA1_c08730 at 899.840 kb on - strand, within PGA1_c08730 at 899.840 kb on - strand, within PGA1_c08730 at 899.852 kb on + strand, within PGA1_c08730 at 899.853 kb on + strand, within PGA1_c08730 at 899.857 kb on + strand, within PGA1_c08730 at 899.860 kb on - strand, within PGA1_c08730 at 899.862 kb on - strand, within PGA1_c08730 at 899.890 kb on + strand, within PGA1_c08730 at 899.906 kb on + strand, within PGA1_c08730 at 899.923 kb on + strand at 900.003 kb on - strand at 900.012 kb on + strand at 900.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH9 remove 897,064 - PGA1_c08700 0.35 +1.3 897,066 + PGA1_c08700 0.36 -1.4 897,094 + PGA1_c08700 0.41 -2.4 897,111 + PGA1_c08700 0.43 +1.2 897,111 + PGA1_c08700 0.43 -0.1 897,111 + PGA1_c08700 0.43 +0.3 897,111 + PGA1_c08700 0.43 +0.2 897,111 + PGA1_c08700 0.43 -1.2 897,119 - PGA1_c08700 0.45 -3.0 897,119 - PGA1_c08700 0.45 +0.2 897,119 - PGA1_c08700 0.45 -0.2 897,119 - PGA1_c08700 0.45 -0.3 897,119 - PGA1_c08700 0.45 -0.7 897,119 - PGA1_c08700 0.45 +1.2 897,119 - PGA1_c08700 0.45 -1.6 897,128 - PGA1_c08700 0.46 +0.6 897,152 - PGA1_c08700 0.50 -0.3 897,246 + PGA1_c08700 0.66 -0.5 897,246 + PGA1_c08700 0.66 +0.3 897,270 + PGA1_c08700 0.70 -2.5 897,278 - PGA1_c08700 0.71 +2.3 897,280 + PGA1_c08700 0.71 +0.6 897,280 + PGA1_c08700 0.71 +1.5 897,394 - -0.3 897,419 + -0.6 897,427 - +0.8 897,475 + +0.1 897,631 - PGA1_c08710 0.32 -0.9 897,640 - PGA1_c08710 0.33 +0.9 897,641 - PGA1_c08710 0.33 -1.8 897,660 - PGA1_c08710 0.37 -0.4 897,694 - PGA1_c08710 0.43 +0.9 897,694 - PGA1_c08710 0.43 -0.2 897,733 + PGA1_c08710 0.50 -2.4 897,741 - PGA1_c08710 0.51 +0.3 897,741 - PGA1_c08710 0.51 +3.2 897,818 + PGA1_c08710 0.65 +0.1 897,818 + PGA1_c08710 0.65 -0.7 897,818 + PGA1_c08710 0.65 -0.2 897,868 - PGA1_c08710 0.74 -1.0 897,870 + PGA1_c08710 0.74 -0.9 897,870 + PGA1_c08710 0.74 -1.1 897,878 + PGA1_c08710 0.76 -0.3 897,878 + PGA1_c08710 0.76 -1.8 897,878 - PGA1_c08710 0.76 +0.5 897,886 - PGA1_c08710 0.77 +0.0 897,886 - PGA1_c08710 0.77 +0.8 897,901 + PGA1_c08710 0.80 -1.3 897,950 - PGA1_c08710 0.88 -4.1 897,968 - -0.1 898,070 + -1.4 898,078 - +0.7 898,078 - -0.1 898,119 - +0.6 898,127 - -2.8 898,149 + -1.6 898,161 + +2.2 898,192 + PGA1_c08720 0.11 +0.4 898,220 + PGA1_c08720 0.12 +0.9 898,259 + PGA1_c08720 0.15 -0.1 898,297 + PGA1_c08720 0.17 -1.8 898,297 + PGA1_c08720 0.17 +0.8 898,297 + PGA1_c08720 0.17 -0.1 898,305 - PGA1_c08720 0.17 +1.5 898,305 - PGA1_c08720 0.17 +1.7 898,305 - PGA1_c08720 0.17 -0.5 898,361 - PGA1_c08720 0.21 +0.7 898,361 - PGA1_c08720 0.21 -0.6 898,361 - PGA1_c08720 0.21 -0.1 898,361 - PGA1_c08720 0.21 +0.7 898,388 + PGA1_c08720 0.22 +0.4 898,429 - PGA1_c08720 0.25 +0.4 898,431 + PGA1_c08720 0.25 -1.3 898,438 + PGA1_c08720 0.25 -0.7 898,451 + PGA1_c08720 0.26 +1.2 898,451 - PGA1_c08720 0.26 +0.2 898,456 - PGA1_c08720 0.26 -0.0 898,456 - PGA1_c08720 0.26 +0.4 898,547 - PGA1_c08720 0.32 +0.0 898,550 - PGA1_c08720 0.32 +0.4 898,579 - PGA1_c08720 0.34 -1.4 898,622 + PGA1_c08720 0.36 +0.4 898,635 - PGA1_c08720 0.37 -0.5 898,655 + PGA1_c08720 0.38 +0.9 898,730 + PGA1_c08720 0.43 +1.1 898,735 + PGA1_c08720 0.43 +0.1 898,735 + PGA1_c08720 0.43 +0.7 898,778 + PGA1_c08720 0.46 +0.9 898,793 + PGA1_c08720 0.46 -0.5 898,900 - PGA1_c08720 0.53 -0.3 898,952 + PGA1_c08720 0.56 -1.4 898,960 + PGA1_c08720 0.56 -2.0 898,960 + PGA1_c08720 0.56 -1.8 898,960 - PGA1_c08720 0.56 -0.0 898,968 - PGA1_c08720 0.57 -2.5 898,968 - PGA1_c08720 0.57 +0.2 898,970 + PGA1_c08720 0.57 -2.1 899,018 - PGA1_c08720 0.60 +0.0 899,018 - PGA1_c08720 0.60 -0.1 899,035 + PGA1_c08720 0.61 -1.5 899,035 + PGA1_c08720 0.61 -0.0 899,035 + PGA1_c08720 0.61 -0.0 899,035 + PGA1_c08720 0.61 -0.9 899,035 + PGA1_c08720 0.61 +0.2 899,040 + PGA1_c08720 0.61 -3.6 899,043 - PGA1_c08720 0.61 -1.7 899,043 - PGA1_c08720 0.61 -0.5 899,043 - PGA1_c08720 0.61 -0.9 899,043 - PGA1_c08720 0.61 +2.6 899,048 - PGA1_c08720 0.62 -0.3 899,067 + PGA1_c08720 0.63 -1.2 899,072 + PGA1_c08720 0.63 -1.4 899,073 - PGA1_c08720 0.63 -0.5 899,075 + PGA1_c08720 0.63 -0.6 899,075 + PGA1_c08720 0.63 +1.2 899,080 - PGA1_c08720 0.64 -0.6 899,083 - PGA1_c08720 0.64 -0.7 899,109 + PGA1_c08720 0.65 +0.6 899,158 + PGA1_c08720 0.68 +1.4 899,265 - PGA1_c08720 0.75 -2.7 899,274 + PGA1_c08720 0.75 -0.8 899,276 + PGA1_c08720 0.75 +0.3 899,277 - PGA1_c08720 0.75 -1.1 899,321 + PGA1_c08720 0.78 -0.1 899,399 + PGA1_c08720 0.82 +0.3 899,409 + PGA1_c08720 0.83 -0.7 899,417 - PGA1_c08720 0.84 -2.0 899,457 + PGA1_c08720 0.86 -0.9 899,457 + PGA1_c08720 0.86 +1.1 899,457 + PGA1_c08720 0.86 -2.6 899,465 - PGA1_c08720 0.86 -0.3 899,465 - PGA1_c08720 0.86 +1.8 899,471 + PGA1_c08720 0.87 +0.9 899,480 - PGA1_c08720 0.87 -0.7 899,484 - PGA1_c08720 0.88 -0.9 899,502 - PGA1_c08720 0.89 -1.6 899,504 + PGA1_c08720 0.89 -0.1 899,514 + PGA1_c08720 0.89 -0.9 899,522 - PGA1_c08720 0.90 +0.5 899,548 + -0.2 899,555 + -2.9 899,580 - +1.4 899,580 - -1.0 899,585 + -0.3 899,626 + +0.7 899,644 + +0.5 899,647 - -0.4 899,649 + -1.6 899,649 + -1.8 899,657 - -0.3 899,657 - -0.2 899,689 + -2.3 899,711 + +0.4 899,717 + -1.5 899,719 + -1.1 899,719 + -2.6 899,719 + -2.0 899,719 + -0.2 899,719 + -0.9 899,719 + +0.4 899,719 + -0.4 899,719 + -0.7 899,719 + -1.6 899,724 + +0.9 899,725 - -2.1 899,727 - -1.5 899,727 - +0.7 899,727 - +0.1 899,727 - -3.4 899,727 - +0.1 899,727 - -0.2 899,727 - -0.8 899,732 - -0.1 899,755 + -1.4 899,756 + -3.2 899,756 + -0.7 899,764 - -0.6 899,764 - +0.9 899,764 - -3.6 899,795 - PGA1_c08730 0.16 +0.5 899,840 - PGA1_c08730 0.42 +0.7 899,840 - PGA1_c08730 0.42 +1.1 899,852 + PGA1_c08730 0.49 +1.0 899,853 + PGA1_c08730 0.50 -1.6 899,857 + PGA1_c08730 0.52 +1.0 899,860 - PGA1_c08730 0.54 +0.3 899,862 - PGA1_c08730 0.55 +0.9 899,890 + PGA1_c08730 0.71 -2.6 899,906 + PGA1_c08730 0.81 -3.0 899,923 + +1.6 900,003 - -2.6 900,012 + +0.2 900,049 - +0.2
Or see this region's nucleotide sequence