Experiment: marine broth pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05770 and PGA1_c05780 are separated by 183 nucleotides PGA1_c05780 and PGA1_c05790 are separated by 148 nucleotides PGA1_c05790 and PGA1_c05800 are separated by 132 nucleotides
PGA1_c05770: PGA1_c05770 - Uncharacterized protein conserved in bacteria, at 590,644 to 591,351
_c05770
PGA1_c05780: PGA1_c05780 - transaldolase Tal, at 591,535 to 592,188
_c05780
PGA1_c05790: PGA1_c05790 - primosomal protein N, at 592,337 to 594,532
_c05790
PGA1_c05800: PGA1_c05800 - YeeE/YedE family (DUF395)., at 594,665 to 595,729
_c05800
Position (kb) 592
593
594
595 Strain fitness (log2 ratio) -2
-1
0
1
2 at 591.352 kb on - strand at 591.365 kb on - strand at 591.368 kb on + strand at 591.368 kb on + strand at 591.387 kb on + strand at 591.397 kb on - strand at 591.452 kb on + strand at 591.457 kb on + strand at 591.457 kb on + strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.465 kb on - strand at 591.465 kb on - strand at 591.516 kb on - strand at 592.217 kb on - strand at 594.603 kb on + strand at 594.611 kb on - strand at 594.681 kb on + strand at 594.712 kb on + strand at 594.717 kb on + strand at 594.809 kb on - strand, within PGA1_c05800 at 594.811 kb on + strand, within PGA1_c05800 at 594.842 kb on + strand, within PGA1_c05800 at 594.919 kb on - strand, within PGA1_c05800 at 594.926 kb on + strand, within PGA1_c05800 at 595.016 kb on - strand, within PGA1_c05800 at 595.021 kb on - strand, within PGA1_c05800 at 595.093 kb on + strand, within PGA1_c05800 at 595.221 kb on + strand, within PGA1_c05800 at 595.246 kb on + strand, within PGA1_c05800 at 595.246 kb on + strand, within PGA1_c05800 at 595.246 kb on + strand, within PGA1_c05800 at 595.254 kb on - strand, within PGA1_c05800 at 595.254 kb on - strand, within PGA1_c05800 at 595.254 kb on - strand, within PGA1_c05800 at 595.365 kb on - strand, within PGA1_c05800 at 595.398 kb on + strand, within PGA1_c05800 at 595.400 kb on - strand, within PGA1_c05800 at 595.524 kb on + strand, within PGA1_c05800 at 595.524 kb on + strand, within PGA1_c05800 at 595.524 kb on + strand, within PGA1_c05800 at 595.524 kb on + strand, within PGA1_c05800 at 595.532 kb on - strand, within PGA1_c05800
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH9 remove 591,352 - -0.1 591,365 - +1.9 591,368 + +1.1 591,368 + +0.4 591,387 + +0.4 591,397 - -1.0 591,452 + +1.0 591,457 + -1.6 591,457 + -0.1 591,460 - +0.5 591,460 - +0.6 591,460 - -1.0 591,460 - +0.1 591,465 - -0.6 591,465 - +0.8 591,516 - +0.1 592,217 - -0.2 594,603 + -0.1 594,611 - -0.4 594,681 + +0.2 594,712 + +0.4 594,717 + -1.4 594,809 - PGA1_c05800 0.14 +0.5 594,811 + PGA1_c05800 0.14 -0.0 594,842 + PGA1_c05800 0.17 -0.8 594,919 - PGA1_c05800 0.24 +0.3 594,926 + PGA1_c05800 0.25 -1.1 595,016 - PGA1_c05800 0.33 -1.0 595,021 - PGA1_c05800 0.33 +1.3 595,093 + PGA1_c05800 0.40 +0.5 595,221 + PGA1_c05800 0.52 +1.9 595,246 + PGA1_c05800 0.55 -1.9 595,246 + PGA1_c05800 0.55 +0.1 595,246 + PGA1_c05800 0.55 +1.1 595,254 - PGA1_c05800 0.55 +1.7 595,254 - PGA1_c05800 0.55 +1.4 595,254 - PGA1_c05800 0.55 +0.6 595,365 - PGA1_c05800 0.66 -1.7 595,398 + PGA1_c05800 0.69 +0.4 595,400 - PGA1_c05800 0.69 +0.6 595,524 + PGA1_c05800 0.81 -2.6 595,524 + PGA1_c05800 0.81 -1.2 595,524 + PGA1_c05800 0.81 +1.3 595,524 + PGA1_c05800 0.81 +1.1 595,532 - PGA1_c05800 0.81 +0.9
Or see this region's nucleotide sequence