Experiment: marine broth pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04780 and PGA1_c04790 are separated by 165 nucleotides PGA1_c04790 and PGA1_c04800 are separated by 92 nucleotides PGA1_c04800 and PGA1_c04810 are separated by 133 nucleotides
PGA1_c04780: PGA1_c04780 - S-adenosylmethionine synthetase MetK, at 469,819 to 471,000
_c04780
PGA1_c04790: PGA1_c04790 - Clp protease., at 471,166 to 471,876
_c04790
PGA1_c04800: PGA1_c04800 - tRNA (guanine-N(7)-)-methyltransferase TrmB, at 471,969 to 472,733
_c04800
PGA1_c04810: PGA1_c04810 - 3-phosphoshikimate 1-carboxyvinyltransferase AroA, at 472,867 to 474,216
_c04810
Position (kb) 471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 471.033 kb on - strand at 471.047 kb on - strand at 471.097 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.157 kb on - strand at 471.225 kb on - strand at 471.257 kb on - strand, within PGA1_c04790 at 471.268 kb on + strand, within PGA1_c04790 at 471.345 kb on + strand, within PGA1_c04790 at 471.345 kb on + strand, within PGA1_c04790 at 471.353 kb on + strand, within PGA1_c04790 at 471.353 kb on - strand, within PGA1_c04790 at 471.386 kb on - strand, within PGA1_c04790 at 471.453 kb on - strand, within PGA1_c04790 at 471.455 kb on + strand, within PGA1_c04790 at 471.565 kb on - strand, within PGA1_c04790 at 471.626 kb on - strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.648 kb on - strand, within PGA1_c04790 at 471.648 kb on - strand, within PGA1_c04790 at 471.650 kb on + strand, within PGA1_c04790 at 471.658 kb on - strand, within PGA1_c04790 at 471.658 kb on - strand, within PGA1_c04790 at 471.658 kb on - strand, within PGA1_c04790 at 471.670 kb on + strand, within PGA1_c04790 at 471.678 kb on - strand, within PGA1_c04790 at 471.678 kb on - strand, within PGA1_c04790 at 471.760 kb on - strand, within PGA1_c04790 at 471.767 kb on + strand, within PGA1_c04790 at 471.772 kb on + strand, within PGA1_c04790 at 471.772 kb on + strand, within PGA1_c04790 at 471.772 kb on + strand, within PGA1_c04790 at 471.775 kb on - strand, within PGA1_c04790 at 471.775 kb on - strand, within PGA1_c04790 at 471.775 kb on - strand, within PGA1_c04790 at 471.780 kb on - strand, within PGA1_c04790 at 471.780 kb on - strand, within PGA1_c04790 at 471.808 kb on + strand at 471.898 kb on + strand at 471.938 kb on + strand at 471.946 kb on - strand at 471.988 kb on - strand at 472.019 kb on - strand at 472.035 kb on + strand at 472.073 kb on + strand, within PGA1_c04800 at 472.081 kb on - strand, within PGA1_c04800 at 472.081 kb on - strand, within PGA1_c04800 at 472.106 kb on + strand, within PGA1_c04800 at 472.161 kb on - strand, within PGA1_c04800 at 472.207 kb on + strand, within PGA1_c04800 at 472.222 kb on - strand, within PGA1_c04800 at 472.225 kb on + strand, within PGA1_c04800 at 472.248 kb on + strand, within PGA1_c04800 at 472.248 kb on + strand, within PGA1_c04800 at 472.294 kb on + strand, within PGA1_c04800 at 472.302 kb on - strand, within PGA1_c04800 at 472.304 kb on - strand, within PGA1_c04800 at 472.310 kb on - strand, within PGA1_c04800 at 472.310 kb on - strand, within PGA1_c04800 at 472.315 kb on + strand, within PGA1_c04800 at 472.361 kb on + strand, within PGA1_c04800 at 472.369 kb on - strand, within PGA1_c04800 at 472.392 kb on - strand, within PGA1_c04800 at 472.405 kb on + strand, within PGA1_c04800 at 472.436 kb on + strand, within PGA1_c04800 at 472.436 kb on + strand, within PGA1_c04800 at 472.441 kb on + strand, within PGA1_c04800 at 472.441 kb on + strand, within PGA1_c04800 at 472.444 kb on - strand, within PGA1_c04800 at 472.444 kb on - strand, within PGA1_c04800 at 472.444 kb on - strand, within PGA1_c04800 at 472.449 kb on - strand, within PGA1_c04800 at 472.449 kb on - strand, within PGA1_c04800 at 472.449 kb on - strand, within PGA1_c04800 at 472.453 kb on + strand, within PGA1_c04800 at 472.497 kb on + strand, within PGA1_c04800 at 472.683 kb on + strand at 472.727 kb on + strand at 472.727 kb on + strand at 472.727 kb on + strand at 472.746 kb on + strand at 472.746 kb on + strand at 472.749 kb on - strand at 472.754 kb on - strand at 472.754 kb on - strand at 472.754 kb on - strand at 472.763 kb on + strand at 472.763 kb on + strand at 472.771 kb on - strand at 472.771 kb on - strand at 472.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH9 remove 471,033 - +0.3 471,047 - +2.1 471,097 + -0.4 471,127 + -1.2 471,127 + -0.1 471,127 + -3.0 471,127 + -1.1 471,127 + -1.8 471,127 + -0.2 471,127 + -2.7 471,127 + +0.9 471,127 + -0.4 471,127 + -1.1 471,127 + +0.8 471,127 + -0.1 471,127 + +0.2 471,127 + -1.2 471,127 + -1.2 471,127 + -3.7 471,127 + -1.1 471,127 + -0.9 471,127 + -0.2 471,127 + +1.7 471,127 + +1.7 471,127 + -0.2 471,127 + -2.2 471,127 + -0.5 471,127 + -0.0 471,127 + -0.0 471,127 + -0.5 471,127 + -0.5 471,127 + +1.1 471,127 + +0.0 471,127 + +0.8 471,135 - -0.5 471,135 - +0.4 471,135 - +0.8 471,135 - +0.0 471,135 - +0.7 471,135 - -3.0 471,135 - -0.1 471,135 - +1.3 471,135 - -0.3 471,135 - +0.5 471,135 - +0.5 471,135 - -0.4 471,135 - +0.7 471,135 - +0.1 471,135 - -0.4 471,135 - -0.5 471,135 - -0.2 471,135 - +0.1 471,157 - -1.7 471,225 - +0.3 471,257 - PGA1_c04790 0.13 -0.7 471,268 + PGA1_c04790 0.14 -1.0 471,345 + PGA1_c04790 0.25 -0.9 471,345 + PGA1_c04790 0.25 -1.4 471,353 + PGA1_c04790 0.26 +0.1 471,353 - PGA1_c04790 0.26 -0.9 471,386 - PGA1_c04790 0.31 -0.9 471,453 - PGA1_c04790 0.40 +0.4 471,455 + PGA1_c04790 0.41 +1.9 471,565 - PGA1_c04790 0.56 -0.2 471,626 - PGA1_c04790 0.65 -2.6 471,640 + PGA1_c04790 0.67 -2.1 471,640 + PGA1_c04790 0.67 -0.9 471,640 + PGA1_c04790 0.67 -0.3 471,640 + PGA1_c04790 0.67 -0.4 471,648 - PGA1_c04790 0.68 -3.0 471,648 - PGA1_c04790 0.68 -1.5 471,650 + PGA1_c04790 0.68 +0.5 471,658 - PGA1_c04790 0.69 -1.1 471,658 - PGA1_c04790 0.69 -3.6 471,658 - PGA1_c04790 0.69 -1.2 471,670 + PGA1_c04790 0.71 -1.0 471,678 - PGA1_c04790 0.72 -2.6 471,678 - PGA1_c04790 0.72 -0.7 471,760 - PGA1_c04790 0.84 +0.5 471,767 + PGA1_c04790 0.85 -0.2 471,772 + PGA1_c04790 0.85 -0.1 471,772 + PGA1_c04790 0.85 -1.4 471,772 + PGA1_c04790 0.85 -0.3 471,775 - PGA1_c04790 0.86 -0.5 471,775 - PGA1_c04790 0.86 -3.3 471,775 - PGA1_c04790 0.86 -0.8 471,780 - PGA1_c04790 0.86 +1.5 471,780 - PGA1_c04790 0.86 -1.0 471,808 + -0.5 471,898 + +1.0 471,938 + -0.9 471,946 - +2.1 471,988 - -0.9 472,019 - +0.2 472,035 + +0.2 472,073 + PGA1_c04800 0.14 -0.5 472,081 - PGA1_c04800 0.15 -0.9 472,081 - PGA1_c04800 0.15 +0.4 472,106 + PGA1_c04800 0.18 +0.4 472,161 - PGA1_c04800 0.25 -0.0 472,207 + PGA1_c04800 0.31 -0.7 472,222 - PGA1_c04800 0.33 +0.1 472,225 + PGA1_c04800 0.33 +1.0 472,248 + PGA1_c04800 0.36 +1.9 472,248 + PGA1_c04800 0.36 -0.6 472,294 + PGA1_c04800 0.42 +1.7 472,302 - PGA1_c04800 0.44 -1.0 472,304 - PGA1_c04800 0.44 +0.2 472,310 - PGA1_c04800 0.45 -0.1 472,310 - PGA1_c04800 0.45 +0.7 472,315 + PGA1_c04800 0.45 +2.5 472,361 + PGA1_c04800 0.51 +0.1 472,369 - PGA1_c04800 0.52 -2.1 472,392 - PGA1_c04800 0.55 -0.3 472,405 + PGA1_c04800 0.57 +0.6 472,436 + PGA1_c04800 0.61 -3.6 472,436 + PGA1_c04800 0.61 +0.6 472,441 + PGA1_c04800 0.62 +0.2 472,441 + PGA1_c04800 0.62 -3.2 472,444 - PGA1_c04800 0.62 +0.1 472,444 - PGA1_c04800 0.62 +1.0 472,444 - PGA1_c04800 0.62 -0.8 472,449 - PGA1_c04800 0.63 -0.0 472,449 - PGA1_c04800 0.63 +0.6 472,449 - PGA1_c04800 0.63 +1.3 472,453 + PGA1_c04800 0.63 -1.0 472,497 + PGA1_c04800 0.69 +0.9 472,683 + -0.9 472,727 + +1.4 472,727 + -1.9 472,727 + +1.9 472,746 + -0.2 472,746 + -1.1 472,749 - -0.4 472,754 - -0.4 472,754 - -1.5 472,754 - -3.1 472,763 + +1.3 472,763 + -0.8 472,771 - -0.4 472,771 - -0.8 472,771 - -1.9
Or see this region's nucleotide sequence