Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17780

Experiment: marine broth pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17750 and PGA1_c17760 overlap by 8 nucleotidesPGA1_c17760 and PGA1_c17770 overlap by 4 nucleotidesPGA1_c17770 and PGA1_c17780 are separated by 13 nucleotidesPGA1_c17780 and PGA1_c17790 are separated by 101 nucleotidesPGA1_c17790 and PGA1_c17800 overlap by 4 nucleotidesPGA1_c17800 and PGA1_c17810 overlap by 4 nucleotides PGA1_c17750: PGA1_c17750 - putative gene transfer agent tail tape measure protein, at 1,859,497 to 1,860,153 _c17750 PGA1_c17760: PGA1_c17760 - gene transfer agent (GTA) protein, at 1,860,146 to 1,860,403 _c17760 PGA1_c17770: PGA1_c17770 - Protein of unknown function (DUF3356)., at 1,860,400 to 1,860,804 _c17770 PGA1_c17780: PGA1_c17780 - putative gene transfer agent major tail protein, at 1,860,818 to 1,861,231 _c17780 PGA1_c17790: PGA1_c17790 - putative gene transfer agent protein, at 1,861,333 to 1,861,740 _c17790 PGA1_c17800: PGA1_c17800 - putative gene transfer agent head-tail adaptor, at 1,861,737 to 1,862,108 _c17800 PGA1_c17810: PGA1_c17810 - putative gene transfer agent protein, at 1,862,105 to 1,862,755 _c17810 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -2 -1 0 1 2at 1859.821 kb on - strand, within PGA1_c17750at 1859.878 kb on - strand, within PGA1_c17750at 1859.917 kb on + strand, within PGA1_c17750at 1859.918 kb on - strand, within PGA1_c17750at 1859.930 kb on + strand, within PGA1_c17750at 1859.930 kb on + strand, within PGA1_c17750at 1859.989 kb on - strand, within PGA1_c17750at 1859.995 kb on + strand, within PGA1_c17750at 1860.062 kb on - strand, within PGA1_c17750at 1860.141 kb on - strandat 1860.226 kb on - strand, within PGA1_c17760at 1860.254 kb on + strand, within PGA1_c17760at 1860.254 kb on + strand, within PGA1_c17760at 1860.280 kb on + strand, within PGA1_c17760at 1860.280 kb on + strand, within PGA1_c17760at 1860.285 kb on - strand, within PGA1_c17760at 1860.322 kb on + strand, within PGA1_c17760at 1860.364 kb on - strand, within PGA1_c17760at 1860.467 kb on - strand, within PGA1_c17770at 1860.656 kb on + strandat 1860.679 kb on + strand, within PGA1_c17770at 1860.760 kb on - strand, within PGA1_c17770at 1860.789 kb on + strandat 1860.797 kb on - strandat 1860.797 kb on - strandat 1860.797 kb on - strandat 1860.870 kb on - strand, within PGA1_c17780at 1860.913 kb on + strand, within PGA1_c17780at 1860.913 kb on + strand, within PGA1_c17780at 1860.913 kb on + strand, within PGA1_c17780at 1861.011 kb on - strand, within PGA1_c17780at 1861.011 kb on - strand, within PGA1_c17780at 1861.040 kb on + strand, within PGA1_c17780at 1861.057 kb on + strand, within PGA1_c17780at 1861.065 kb on - strand, within PGA1_c17780at 1861.075 kb on + strand, within PGA1_c17780at 1861.114 kb on - strand, within PGA1_c17780at 1861.161 kb on - strand, within PGA1_c17780at 1861.280 kb on + strandat 1861.280 kb on + strandat 1861.283 kb on - strandat 1861.315 kb on + strandat 1861.398 kb on - strand, within PGA1_c17790at 1861.436 kb on - strand, within PGA1_c17790at 1861.669 kb on + strand, within PGA1_c17790at 1861.693 kb on - strand, within PGA1_c17790at 1861.722 kb on + strandat 1861.728 kb on + strandat 1861.729 kb on + strandat 1861.736 kb on - strandat 1861.792 kb on + strand, within PGA1_c17800at 1861.936 kb on + strand, within PGA1_c17800at 1862.055 kb on + strand, within PGA1_c17800at 1862.172 kb on - strand, within PGA1_c17810at 1862.187 kb on + strand, within PGA1_c17810

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth pH9
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1,859,821 - PGA1_c17750 0.49 -0.7
1,859,878 - PGA1_c17750 0.58 -0.7
1,859,917 + PGA1_c17750 0.64 -2.1
1,859,918 - PGA1_c17750 0.64 +1.2
1,859,930 + PGA1_c17750 0.66 +0.3
1,859,930 + PGA1_c17750 0.66 +1.3
1,859,989 - PGA1_c17750 0.75 -0.7
1,859,995 + PGA1_c17750 0.76 -1.7
1,860,062 - PGA1_c17750 0.86 -1.5
1,860,141 - -0.2
1,860,226 - PGA1_c17760 0.31 -0.4
1,860,254 + PGA1_c17760 0.42 -0.3
1,860,254 + PGA1_c17760 0.42 +0.3
1,860,280 + PGA1_c17760 0.52 +0.2
1,860,280 + PGA1_c17760 0.52 -1.0
1,860,285 - PGA1_c17760 0.54 -0.7
1,860,322 + PGA1_c17760 0.68 -2.0
1,860,364 - PGA1_c17760 0.84 -0.7
1,860,467 - PGA1_c17770 0.17 +0.4
1,860,656 + -0.7
1,860,679 + PGA1_c17770 0.69 -0.1
1,860,760 - PGA1_c17770 0.89 -0.8
1,860,789 + -0.1
1,860,797 - +0.3
1,860,797 - -0.7
1,860,797 - -0.7
1,860,870 - PGA1_c17780 0.13 -0.7
1,860,913 + PGA1_c17780 0.23 +0.1
1,860,913 + PGA1_c17780 0.23 +0.8
1,860,913 + PGA1_c17780 0.23 -1.7
1,861,011 - PGA1_c17780 0.47 +0.7
1,861,011 - PGA1_c17780 0.47 -0.7
1,861,040 + PGA1_c17780 0.54 -1.0
1,861,057 + PGA1_c17780 0.58 -2.7
1,861,065 - PGA1_c17780 0.60 -1.0
1,861,075 + PGA1_c17780 0.62 -1.5
1,861,114 - PGA1_c17780 0.71 -0.2
1,861,161 - PGA1_c17780 0.83 -0.7
1,861,280 + -1.5
1,861,280 + +0.9
1,861,283 - -2.1
1,861,315 + -0.7
1,861,398 - PGA1_c17790 0.16 -0.7
1,861,436 - PGA1_c17790 0.25 +1.9
1,861,669 + PGA1_c17790 0.82 +2.3
1,861,693 - PGA1_c17790 0.88 -1.7
1,861,722 + -2.2
1,861,728 + +1.1
1,861,729 + +1.5
1,861,736 - -1.0
1,861,792 + PGA1_c17800 0.15 -2.4
1,861,936 + PGA1_c17800 0.53 +0.9
1,862,055 + PGA1_c17800 0.85 -2.1
1,862,172 - PGA1_c17810 0.10 +0.4
1,862,187 + PGA1_c17810 0.13 +1.3

Or see this region's nucleotide sequence